Package: GeneNetworkBuilder
Type: Package
Version: 1.22.0
Title: Build Regulatory Network from ChIP-chip/ChIP-seq and Expression
        Data
Authors@R: c(person("Jianhong Ou", "Developer", role = c("aut", "cre"),
        email = "jianhong.ou@umassmed.edu"), person("Lihua Julie Zhu",
        "Developer", role = "aut", email = "Julie.Zhu@umassmed.edu"))
Author: Jianhong Ou , Haibo Liu, Heidi A Tissenbaum and Lihua Julie Zhu
Maintainer: Jianhong Ou <jianhong.ou@umassmed.edu>
Imports: plyr, graph, htmlwidgets, Rgraphviz, rjson, XML, methods,
        grDevices, stats, graphics
Depends: R (>= 2.15.1), Rcpp (>= 0.9.13)
Suggests: RUnit, BiocGenerics, RBGL, knitr, simpIntLists, shiny,
        STRINGdb
LinkingTo: Rcpp
Description: Appliation for discovering direct or indirect targets of
    transcription factors using ChIP-chip or ChIP-seq, and
    microarray or RNA-seq gene expression data. Inputting a list of
    genes of potential targets of one TF from ChIP-chip or
    ChIP-seq, and the gene expression results, GeneNetworkBuilder
    generates a regulatory network of the TF.
License: GPL (>= 2)
Lazyload: yes
biocViews: Sequencing, Microarray, GraphAndNetwork
VignetteBuilder: knitr
RoxygenNote: 6.0.1
NeedsCompilation: yes
Packaged: 2018-05-01 01:58:05 UTC; biocbuild
Built: R 3.5.0; i386-w64-mingw32; 2018-05-01 12:04:56 UTC; windows
Archs: i386, x64
