calculate_multifunc {EGAD} | R Documentation

## Performing multifunctionality analysis

### Description

The function performs multifunctionality analysis ([1]) for a set of annotated genes and creates a rank based optimallist. For annotations use an ontology that is large enough to serve as a prior (e.g. GO, Phenocarta).

### Usage

    calculate_multifunc(genes.labels)

### Arguments

`genes.labels` | Annotation matrix

### Value

gene.mfs Returns matrix with evaluation of gene function prediction by given labels:

### Examples

    genes.labels <- matrix( sample(c(0,1), 100, replace=TRUE),ncol=10,nrow=10)
    rownames(genes.labels) = paste('gene', 1:10, sep='')
    colnames(genes.labels) = paste('label', 1:10, sep='')
    mf <- calculate_multifunc(genes.labels)

[Package EGAD version 1.8.0 Index]