391f8a3899bc796bbed73c5b3212a2d8 *CITATION
ad93477a41f3456f29be27614fe43769 *DESCRIPTION
ae644fcd49997d3efa297b417ab4100f *INDEX
27007ff6ce3b706d49c4a7d65eab8cf7 *Meta/Rd.rds
67d0d5964f3a04d88f780b55cff145de *Meta/features.rds
c36bc685ec9abe7b0b486b2fcb74daa9 *Meta/hsearch.rds
f6ad61db860efce9a09b15ebdc9414a8 *Meta/links.rds
a8810529558abf20c0aba0e84319f780 *Meta/nsInfo.rds
57f95e2e853de67289b17b14c1d15352 *Meta/package.rds
962c7aa1ac388246be6794fb1406d714 *Meta/vignette.rds
11bec9a52fb45fc35a863eff91b538c7 *NAMESPACE
ebf0fc819595d631b8bf280c4b049940 *R/DiffLogo
2dfbb58c6913363d3f148c2ad0497f62 *R/DiffLogo.rdb
26b772d7772ce212acc44987e719cd11 *R/DiffLogo.rdx
e27c8b408c4ec4b44194743158c837c0 *doc/DiffLogoBasics.R
68c883ea98ff6663d211382a28a0038c *doc/DiffLogoBasics.Rnw
af39c0c525d5b1e6a3f4c0a91ce9f309 *doc/DiffLogoBasics.pdf
187d017a70ac056aad2a2f75d7648a88 *doc/index.html
9e64524098dcc3547b0a5033d37a3984 *extdata/alignments/F-box_bacteria.seq.fa
b638c19a42f513e456205f9f25794d2f *extdata/alignments/F-box_fungi.seq.fa
9c3c87fdf80fefc6cf3d20485aa94743 *extdata/alignments/F-box_metazoa.seq.fa
81c829501e6d19ac9ebe29dc3eecf303 *extdata/alignments/F-box_viridiplantae.seq.fa
45eea31652c9bf73aff2c145ab10ce97 *extdata/alignments/Mad.txt
707dbdd70ccc0cc51590f505e03f6a70 *extdata/alignments/Max.txt
b411ab2abc76e3437ccd6e818df31d54 *extdata/alignments/Myc.txt
d6422185297c2583f4419f467aec0574 *extdata/alignments/calamodulin_1.txt
4d0f44df6595197edd2b21d3549b4e57 *extdata/alignments/calamodulin_2.txt
2cec07f111c114b62e74dc5fda6d5b17 *extdata/alignments/phosphorylation_1.txt
610cceb5049e7cca41221bce75f23d95 *extdata/alignments/phosphorylation_2.txt
c78d0348b409bfaf488df306859666da *extdata/alignments/ubiquitination_1.txt
cdce4193c5fadfe94bc64bd20fd082b5 *extdata/alignments/ubiquitination_2.txt
8c38fdb2ea172dabd1ab4c45ddf5a4cb *extdata/homer/CTCF_SatelliteElement_Zf_CD4.motif
774f4bdd1a44d8c272a63396d7e9456c *extdata/homer/CTCF_Zf_CD4.motif
eaaac1b0e8624dce03d814d29ab7a8ac *extdata/homer/Max.motif
fd5d4c365e7e5de7f31f2adcc8df2a53 *extdata/homer/c-Myc.motif
ccc5a3fef2d1a0e70be046cce43dc22e *extdata/pfm/ctcf_jaspar.pfm
6093b56d5f72163054afddfa7e1013e3 *extdata/pwm/GM12878.pwm
ac0ed6904d023f00b38f953060434399 *extdata/pwm/H1-hESC.pwm
5c049781855e3d08d476eb735e438438 *extdata/pwm/HUVEC.pwm
56e78321b415f4e5f39cb226ddb3915c *extdata/pwm/HeLa-S3.pwm
f340a2bd526bb8cfe484a06f41e0923e *extdata/pwm/HepG2.pwm
a55a478ca869b172f945c7e004de9aba *extdata/pwm/K562.pwm
7256e36aa113e2ef2f25345cdf816682 *extdata/pwm/MCF7.pwm
d7bade5c657d185fc7c4b7e15199183b *extdata/pwm/NHEK.pwm
1e417b7456962e38375fdb5de6c67bb4 *extdata/pwm/ProgFib.pwm
d1d4f1b8a6f4aa46a8181c7d85f2d199 *help/AnIndex
a74952d41ae86e97d463b2e5fd37d7f9 *help/DiffLogo.rdb
9e40f3d83be722886c37cea7bc1f18dc *help/DiffLogo.rdx
818ae0fca4fcfc5eb5f600b53a4adadf *help/aliases.rds
c93d74534470f9602329cdf74099f5bb *help/paths.rds
94010f1e019d64b285cf7aab11490150 *html/00Index.html
01a9de723e14ac2d4e952a14a784deee *html/ASN.html
f034d1e33f8b9206d93685230de0ccd1 *html/Alphabet.html
f95f159a34ba1bdf5a17213bd81da814 *html/DNA.html
611275ec7e3c4b600d4c3615094fa09d *html/FULL_ALPHABET.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
6a8f242e6a870471fe56d6752a4c30d3 *html/RNA.html
7d55a1032e2e1217a0d83d3003eb9aef *html/alignPwmSets.html
800ad8840747ef444ce195f84f6303bd *html/baseDistributionPwm.html
47839657a336ab007f19e5610a11148c *html/calculatePvalue.html
0e168645e2a14625f763585f8a0573e8 *html/createDiffLogoObject.html
76e58bcaf9d75392d997830c18944c18 *html/diffLogo.html
0d579a97529adbe360c2b1f9c6d4d76d *html/diffLogoFromPwm.html
c572d8d1bd677a86855d7f1e77cddc2c *html/diffLogoTable.html
6739ab6c383c1d9ab107546c20313c9f *html/diffLogoTableConfiguration.html
9e3e2b2aaa18a61832a5bfde2d615059 *html/differenceOfICs.html
4d19ff4fb1e2cf2864a2d114b91783c9 *html/drawDiffLogoTable.html
5e77d97f3018a769cb20b8ff093f297a *html/enrichDiffLogoObjectWithPvalues.html
4c09a4ffe231361719f6b17f8305559e *html/enrichDiffLogoTableWithPvalues.html
deed7757eb6cc1c5574df3207d898d52 *html/extendPwmsFromAlignmentVector.html
ec9948e9fb87d41e9f4a4eac42ebdeb7 *html/getAlphabetFromCharacters.html
a5b0476440a3d6218377ac5d2a827f9b *html/getAlphabetFromSequences.html
98c9773332732869340a10b5d6911873 *html/getPwmFromAlignment.html
293ee22d568256fa3f0da02e058d9dd4 *html/getPwmFromAlignmentFile.html
3e7a30414ff56b46e887470f4680517f *html/getPwmFromFastaFile.html
42762a898045fe145bb4219d20730b45 *html/getPwmFromFile.html
4e453e432f0750917c660590039c746f *html/getPwmFromHomerFile.html
9cdc46008edc12c2262866db0f8e69ed *html/getPwmFromPfmOrJasparFile.html
85e8debe7ef1272977f1ac556dcf998e *html/getPwmFromPwmFile.html
5228c942cf5a818bbabca918962f3938 *html/getSequencesFromAlignmentFile.html
b5e37746f4f804d2ac4ebd7245fb14fd *html/getSequencesFromFastaFile.html
9d05d1741fd1d71069ff63d7f758e245 *html/informationContent.html
574ef97b1ab204782e89601b4e0b43bb *html/localPwmAlignment.html
a48ceaf7819e2c03fe66e4293d81a961 *html/lossOfAbsICDifferences.html
470e36a457de55071f161fe14dd0ce5b *html/multipleLocalPwmsAlignment.html
c80dad2cf206b7939cbda06abf69c311 *html/normalizePWM.html
14e1b142f98292490e3eb338c7fe5e54 *html/normalizedDifferenceOfProbabilities.html
4c829eeef18d35ea98c9892e77d234bf *html/prepareDiffLogoTable.html
f284e7a1368b38347114896cda8d28fa *html/probabilities.html
e131492c5465105dceeeeed64fab7b0b *html/pwmDivergence.html
7dce28d7f3efeeabb24950edcbd85946 *html/pwmsDistanceMatrix.html
5ebdf8ffb3f8f411e0e7ba4433cb0312 *html/reverseAlignmentVector.html
7fe847ebd180394623f870e9b34530c8 *html/seqLogo.html
9a509bcbf730bb746b4b7abd22072e78 *html/shannonDivergence.html
25a942d59ccf8746999ba46235f98a78 *html/sumOfAbsICDifferences.html
601c288a081e4e44b0c6a8d31d2974ca *html/sumOfAbsProbabilityDifferences.html
fd3fe747de1eaff96bda47a1da988e02 *html/sumProbabilities.html
a684d400299c77e257a1c92bbd21befc *html/switchDirection.html
863348359efe94ac09970f00d38dcf5c *html/twoSetsAveragePwmDivergenceFromAlignmentVector.html
