DEScan2                 DEScan2
RleListToRleMatrix      RleListToRleMatrix
binnedCoverage          binnedCoverage
constructBedRanges      constructBedRanges
countFinalRegions       countFinalRegions
cutGRangesPerChromosome
                        cutGRangesPerChromosome
divideEachSampleByChromosomes
                        divideEachSampleByChromosomes
finalRegions            finalRegions
findOverlapsOverSamples
                        findOverlapsOverSamples
findPeaks               findPeaks
fromSamplesToChrsGRangesList
                        fromSamplesToChrsGRangesList
keepRelevantChrs        keepRelevantChrs
readFilesAsGRangesList
                        readFilesAsGRangesList
setGRGenomeInfo         setGRGenomeInfo given a genome code (i.e.
                        "mm9","mm10","hg19","hg38") retrieve the
                        SeqInfo of that genome and assigns it to the
                        input GRanges. Finally filters out those Infos
                        not necessary to the GRanges.
