addOriginOfValue	addOriginOfValue
barplotEnrichGO_HC	barplotEnrichGO_HC
barplotGroupGO_HC	barplotGroupGO_HC
boxPlotD	boxPlotD
boxPlotD_HC	boxPlotD_HC
BuildAdjacencyMatrix	BuildAdjacencyMatrix
BuildColumnToProteinDataset	BuildColumnToProteinDataset
BuildColumnToProteinDataset_par	BuildColumnToProteinDataset_par
buildLogText	buildLogText
check.conditions	check.conditions
check.design	check.design
compareNormalizationD	compareNormalizationD
compareNormalizationD_HC	compareNormalizationD_HC
compute.t.tests	compute.t.tests
corrMatrixD	corrMatrixD
corrMatrixD_HC	corrMatrixD_HC
CountPep	CountPep
createMSnset	createMSnset
CVDistD	CVDistD
CVDistD_HC	CVDistD_HC
deleteLinesFromIndices	deleteLinesFromIndices
densityPlotD	densityPlotD
densityPlotD_HC	densityPlotD_HC
diffAnaComputeFDR	diffAnaComputeFDR
diffAnaGetSignificant	diffAnaGetSignificant
diffAnaSave	diffAnaSave
diffAnaVolcanoplot	diffAnaVolcanoplot
diffAnaVolcanoplot_rCharts	diffAnaVolcanoplot_rCharts
enrich_GO	enrich_GO
findMECBlock	findMECBlock
formatLimmaResult	formatLimmaResult
fudge2LRT	fudge2LRT
getIndicesConditions	getIndicesConditions
getIndicesOfLinesToRemove	getIndicesOfLinesToRemove
getListNbValuesInLines	getListNbValuesInLines
getNumberOf	getNumberOf
getNumberOfEmptyLines	getNumberOfEmptyLines
getPaletteForLabels	getPaletteForLabels
getPaletteForLabels_HC	getPaletteForLabels_HC
getPaletteForReplicates	getPaletteForReplicates
getPaletteForReplicates_HC	getPaletteForReplicates_HC
getPourcentageOfMV	getPourcentageOfMV
getProcessingInfo	getProcessingInfo
getProteinsStats	getProteinsStats
getQuantile4Imp	getQuantile4Imp
getTextForAggregation	getTextForAggregation
getTextForAnaDiff	getTextForAnaDiff
getTextForFiltering	getTextForFiltering
getTextForGOAnalysis	getTextForGOAnalysis
getTextForImputation	getTextForImputation
getTextForNewDataset	getTextForNewDataset
getTextForNormalization	getTextForNormalization
GOAnalysisSave	GOAnalysisSave
GraphPepProt	GraphPepProt
group_GO	group_GO
hc_FC_DensityPlot	hc_FC_DensityPlot
hc_mvTypePlot2	hc_mvTypePlot2
heatmap.DAPAR	heatmap.DAPAR
heatmapD	heatmapD
impute.detQuant	impute.detQuant
impute.pa2	impute.pa2
is.MV	is.MV
is.OfType	is.OfType
LH0	LH0
LH0.lm	LH0.lm
LH1	LH1
LH1.lm	LH1.lm
limmaCompleteTest	limmaCompleteTest
listSheets	listSheets
make.contrast	make.contrast
make.design	make.design
make.design.1	make.design.1
make.design.2	make.design.2
make.design.3	make.design.3
MeanPeptides	MeanPeptides
mvFilter	mvFilter
mvFilterFromIndices	mvFilterFromIndices
mvFilterGetIndices	mvFilterGetIndices
mvHisto	mvHisto
mvHisto_HC	mvHisto_HC
mvImage	mvImage
mvImputation	mvImputation
mvPerLinesHisto	mvPerLinesHisto
mvPerLinesHistoPerCondition	mvPerLinesHistoPerCondition
mvPerLinesHistoPerCondition_HC	mvPerLinesHistoPerCondition_HC
mvPerLinesHisto_HC	mvPerLinesHisto_HC
mvTypePlot	mvTypePlot
my_hc_chart	my_hc_chart
my_hc_ExportMenu	my_hc_ExportMenu
nonzero	nonzero
normalizeD	normalizeD
pepa.test	pepa.test
pepAgregate	pepAgregate
proportionConRev_HC	proportionConRev_HC
rbindMSnset	rbindMSnset
readExcel	readExcel
reIntroduceMEC	reIntroduceMEC
removeLines	removeLines
samLRT	samLRT
saveParameters	saveParameters
scatterplotEnrichGO_HC	scatterplotEnrichGO_HC
setMEC	setMEC
StringBasedFiltering	StringBasedFiltering
StringBasedFiltering2	StringBasedFiltering2
SumPeptides	SumPeptides
test.design	test.design
TopnPeptides	TopnPeptides
translatedRandomBeta	translatedRandomBeta
univ_AnnotDbPkg	univ_AnnotDbPkg
violinPlotD	violinPlotD
wrapper.boxPlotD	wrapper.boxPlotD
wrapper.boxPlotD_HC	wrapper.boxPlotD_HC
wrapper.compareNormalizationD	wrapper.compareNormalizationD
wrapper.compareNormalizationD_HC	wrapper.compareNormalizationD_HC
wrapper.corrMatrixD	wrapper.corrMatrixD
wrapper.corrMatrixD_HC	wrapper.corrMatrixD_HC
wrapper.CVDistD	wrapper.CVDistD
wrapper.CVDistD_HC	wrapper.CVDistD_HC
wrapper.dapar.impute.mi	wrapper.dapar.impute.mi
wrapper.densityPlotD	wrapper.densityPlotD
wrapper.densityPlotD_HC	wrapper.densityPlotD_HC
wrapper.hc_mvTypePlot2	wrapper.hc_mvTypePlot2
wrapper.heatmapD	wrapper.heatmapD
wrapper.impute.detQuant	wrapper.impute.detQuant
wrapper.impute.fixedValue	wrapper.impute.fixedValue
wrapper.impute.KNN	wrapper.impute.KNN
wrapper.impute.pa	wrapper.impute.pa
wrapper.impute.pa2	wrapper.impute.pa2
wrapper.impute.slsa	wrapper.impute.slsa
wrapper.mvHisto	wrapper.mvHisto
wrapper.mvHisto_HC	wrapper.mvHisto_HC
wrapper.mvImage	wrapper.mvImage
wrapper.mvImputation	wrapper.mvImputation
wrapper.mvPerLinesHisto	wrapper.mvPerLinesHisto
wrapper.mvPerLinesHistoPerCondition	wrapper.mvPerLinesHistoPerCondition
wrapper.mvPerLinesHistoPerCondition_HC	wrapper.mvPerLinesHistoPerCondition_HC
wrapper.mvPerLinesHisto_HC	wrapper.mvPerLinesHisto_HC
wrapper.mvTypePlot	wrapper.mvTypePlot
wrapper.normalizeD	wrapper.normalizeD
wrapper.t_test_Complete	wrapper.t_test_Complete
wrapper.violinPlotD	wrapper.violinPlotD
wrapperCalibrationPlot	wrapperCalibrationPlot
writeMSnsetToCSV	writeMSnsetToCSV
writeMSnsetToExcel	writeMSnsetToExcel
