heatmapD {DAPAR} | R Documentation

## This function is a wrapper to `heatmap.2` that displays quantitative data in the `exprs()` table of an object of class `MSnSet`

### Description

Heatmap of the quantitative proteomic data of a `MSnSet` object

### Usage

    heatmapD(qData, distance = "euclidean", cluster = "complete",
      dendro = FALSE)

### Arguments

`qData` | A dataframe that contains quantitative data.
`distance` | The distance used by the clustering algorithm to compute the dendrogram. See `help(heatmap.2)`
`cluster` | the clustering algorithm used to build the dendrogram. See `help(heatmap.2)`
`dendro` | A boolean to indicate fi the dendrogram has to be displayed

### Value

A heatmap

### Author(s)

Florence Combes, Samuel Wieczorek

### Examples

    require(DAPARdata)
    data(Exp1_R25_pept)
    obj <- mvFilter(Exp1_R25_pept[1:1000], "wholeMatrix", 6)
    qData <- Biobase::exprs(obj)
    heatmapD(qData)

[Package DAPAR version 1.12.11 Index]