hc_FC_DensityPlot {DAPAR} | R Documentation

## Density plots of FC values

### Description

This function show the density plots of Fold Change (the same as calculated by limma) for a list of the comparisons of conditions in a differnetial analysis.

### Usage

    hc_FC_DensityPlot(df_FC, threshold_LogFC = 0)

### Arguments

`df_FC` | A dataframe that contains the FC values
`threshold_LogFC` | The threshold on log(Fold Change) to distinguish between differential and non-differential data

### Value

A highcharts density plot

### Author(s)

Samuel Wieczorek

### Examples

    require(DAPARdata)
    data(Exp1_R25_pept)
    obj <- Exp1_R25_pept[1:1000]
    keepThat <- mvFilterGetIndices(obj, 'wholeMatrix', ncol(obj))
    obj <- mvFilterFromIndices(obj, keepThat)
    qData <- Biobase::exprs(obj)
    sTab <- Biobase::pData(obj)
    limma <- limmaCompleteTest(qData,sTab)
    hc_FC_DensityPlot(limma$FC)

[Package DAPAR version 1.12.11 Index]