BuildAdjacencyMatrix {DAPAR} | R Documentation

## Function matrix of appartenance group

### Description

Method to create a binary matrix with proteins in columns and peptides in lines on a `MSnSet` object (peptides)

### Usage

    BuildAdjacencyMatrix(obj.pep, protID, unique = TRUE)

### Arguments

`obj.pep` | An object (peptides) of class `MSnSet`.
`protID` | The name of proteins ID column
`unique` | A boolean to indicate whether only the unique peptides must be considered (TRUE) or if the shared peptides have to be integrated (FALSE).

### Value

A binary matrix

### Author(s)

Florence Combes, Samuel Wieczorek, Alexia Dorffer

### Examples

    require(DAPARdata)
    data(Exp1_R25_pept)
    BuildAdjacencyMatrix(Exp1_R25_pept[1:1000], "Protein.group.IDs", TRUE)

[Package DAPAR version 1.12.11 Index]