2ab94a6733195eae1c19304bbdab987b *CITATION
f401148d5e76bee32289009bf1c3d88e *DESCRIPTION
c8f08dfae8335eb3a2ece78e918b6cc2 *INDEX
3012603cdaf1e6177939071fe1f738cf *Meta/Rd.rds
0ae5158efb74de46a99ced8e69649e9a *Meta/data.rds
67d0d5964f3a04d88f780b55cff145de *Meta/features.rds
e7edbe2d01af2b2a61b9cbd8eff55ecf *Meta/hsearch.rds
6006c3860614ea7db2a601b2f27adf7e *Meta/links.rds
dc6401750d8e5fb354947832deed1054 *Meta/nsInfo.rds
9b33ae554d4d12f81241e711573a20fe *Meta/package.rds
3078b6fc6fe591d07054def82cb1d3a3 *Meta/vignette.rds
2c6989a4160f54e587717dc36930757a *NAMESPACE
c765d146b1d1232590a7c25262f9fdae *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/Chicago
bfcf8076a9e7892f982e8e131da26ff4 *R/Chicago.rdb
23ef5378893e6d6840376c1ed5fe56ed *R/Chicago.rdx
be5c025eb1be7bfca21cf1dd10fac3fd *data/cdUnitTest.rda
8457791f37ca03b3893787812c10977c *doc/Chicago.R
91e03ffb9903f7c5da93bb38e80e90c5 *doc/Chicago.Rmd
759edfd72e217e6cae91396d2d07b2d8 *doc/Chicago.html
37492ceff9179c57c963aac08c8ae0fd *doc/index.html
bc7339c0acdef5dd9556e786cd4108c8 *extdata/unitTestChIP/featuresmESC.txt
9a3ab07f0a9d5bca66f6e69a301384e2 *extdata/unitTestChIP/unitTestCTCF_ENCFF001ZQY.broadPeak.bed
50a37b4afbc409ab065ff1be6c0846a9 *extdata/unitTestChIP/unitTestH3K27me3_ENCFF001ZJO.broadPeak.bed
3a0b059f32523b4c2c5c5c200a9a916d *extdata/unitTestChIP/unitTestwgEncodeLicrHistoneEse14H3k27acME0129olaStdPk.broadPeak
f8fe5c018ac5126ad05082f3cf235030 *extdata/unitTestChIP/unitTestwgEncodeSydhHistEse14H3k04me3StdPk.narrowPeak
77875efe530d66bbe85c38beb8edd4de *extdata/unitTestChIP/unitTestwgEncodeSydhHistEse14H3k09me3StdPk.narrowPeak
d33768e766f58986b79f1786e9727304 *extdata/unitTestData/unitTest_mESC_rep1.chinput
176bdad1ce209180fdb676818094ab67 *extdata/unitTestData/unitTest_mESC_rep2.chinput
6d658c9192a9d45438425dd25195491a *extdata/unitTestDesign/unitTest.baitmap
0093ffe703303e3a5d0b6e1a0ef6d660 *extdata/unitTestDesign/unitTest.nbpb
b4bb6de635bb1205e293c61efb750efc *extdata/unitTestDesign/unitTest.npb
60a904049b15186b76b54b9f7fcae9c4 *extdata/unitTestDesign/unitTest.poe
d27a4f83d5f8dda72f4d99ebd8aa5742 *extdata/unitTestDesign/unitTest.rmap
b70696ed8eea9b1051fa36f50518ad8b *extdata/weights/GM12878-2reps.settings
bdaefdfe9a1bc018a82fd584a1b2e182 *extdata/weights/humanMacrophage-7reps.settings
80d6c48f96a472892d2fe4d313a80930 *extdata/weights/mESC-2reps.settings
b0627d2a2129963ae7d2639ad3a67bd3 *help/AnIndex
711afc822d9b6c29b4f031fd72da48af *help/Chicago.rdb
af5c5ac6d641c4c18fa8fa2ef382bb33 *help/Chicago.rdx
d4097b844e95259a7eceffde0e4f9a7e *help/aliases.rds
17ae1ad121ceb8a3e4544107926f0540 *help/paths.rds
936bec01a6a08168cae6c1bdb5ea28b2 *html/00Index.html
608e27157d2ce93919004ca778113fbd *html/Chicago-package.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
b971dad189c8a9748fa42e16b5975822 *html/cdUnitTest.html
aaaa3f7c3edefe625fcd081de13e843c *html/chicagoData.html
e8392ec0d6edc47c45bb0baf1e55fab0 *html/chicagoPipeline.html
13695491eba18c98107ff407b702a9a2 *html/copyCD.html
62c8cd54ecb950eec84d46dfdf025c34 *html/defaultSettings.html
ec1a6d76f2689903d06fea0cf84b4c28 *html/estimateBrownianComponent.html
a194250bc334539dc01ba5f3398db402 *html/estimateDistFun.html
8b918624cd89c2d079559a67b4a35419 *html/estimateTechnicalNoise.html
dbe4fe3ec9ca5119fc3416088c958a72 *html/exportResults.html
3e9c861df6e6aacded5ebf38fccc70ca *html/getPvals.html
84ab02f4a2c9a47632d498e7fcdf81f8 *html/getScores.html
ee5ccb01b83aa5f6a640161eae5b6a69 *html/getSkOnly.html
e972943a7a00d330cec67f1ef03f548a *html/mergeSamples.html
70e771200705a5ee7cc199cc4106aab4 *html/modifySettings.html
264c01a2115e0072948e2127c19af146 *html/normaliseBaits.html
9c1de1920b5a6410b1400b7d4ca4e4c3 *html/normaliseOtherEnds.html
7bdf7d8f95812bd5d91d7a415ca1fdcc *html/overlapFragWithFeatures.html
194a7b7e3801a0cd7b3ca1d09d9b4a5a *html/peakEnrichment4Features.html
432dbe78a9b17fa0301d82cbf881bf64 *html/plotBaits.html
599f62cb55e9a051c1c755186fd51611 *html/plotDistFun.html
5bb771920b41294fa3b8a3b4c65d36f6 *html/readAndMerge.html
8601b64b45edbad7b6d2a6e31c81739c *html/readSample.html
d03eaaf2a1816e7bbbd66f359f772987 *html/setExperiment.html
