21b25a700076726bd0a789514a4106cf *DESCRIPTION
6266cd4977f900afcaf6a175785cdeff *INDEX
44db57e6676d1611e887bbf2ee0a8f79 *Meta/Rd.rds
84f401b250bf0b84d1ef285157a878e1 *Meta/data.rds
67d0d5964f3a04d88f780b55cff145de *Meta/features.rds
fc6c34c4faa91c205ca8ca050e4fe213 *Meta/hsearch.rds
19d706efcbbe266a9b0dd9e62b78f76e *Meta/links.rds
7d04548ce37cc3ffe70cddd0f0507f94 *Meta/nsInfo.rds
0bc9661a2c5cce278f2aa2bd76418ac2 *Meta/package.rds
f6b1ee8f62d57a7dfa5c095c78f91e4d *Meta/vignette.rds
f22c792c43684d8f72784c7dc6e5d3d3 *NAMESPACE
45564de47f9c7ff5f7fd3d93dccfa4e6 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/ChIPSeqSpike
d44d626f91f17795206bf2603cc89d4d *R/ChIPSeqSpike.rdb
413802503673868babec1b665f9b5ea6 *R/ChIPSeqSpike.rdx
b25a6ef65708280681dd50fb7c27dfae *data/datalist
fade11720c5a57972e754b0f82ffc2bc *data/ratio.RData
798d46e8bbbc03aabeed3d10bd64ed9a *data/result_estimateScalingFactors.RData
509e53f9726711bcc54a026b819831f7 *data/result_extractBinding.RData
6e45b4d0099ed5c86a167e0ffd69865b *doc/ChIPSeqSpike.R
5b05e393cf652375d4bab055c4ecd4c8 *doc/ChIPSeqSpike.Rmd
9863da7bafa87ee8dc9266b81dfaaaf3 *doc/ChIPSeqSpike.pdf
0e47348204dd0833c3e9601098464a29 *doc/index.html
e1b0857cfa8b9dcb2985422937745d31 *extdata/bam_files/H3K79me2_0_dm3-filtered.bam
b68ec110a950b71a3b13baa15a5dec0a *extdata/bam_files/H3K79me2_0_hg19-filtered.bam
e59bb25fde9cda6353c2d9bbcabcaa3e *extdata/bam_files/H3K79me2_100_dm3-filtered.bam
80bd8e48d6dcda4d760ac1602c31cf9e *extdata/bam_files/H3K79me2_100_hg19-filtered.bam
d6725b83c9229d109a291c3e4b984e7c *extdata/bam_files/H3K79me2_50_dm3-filtered.bam
f3c641290c9b4376058edf23eb6f72ae *extdata/bam_files/H3K79me2_50_hg19-filtered.bam
b2e75b31f0316749aa36a3d9b7c4a761 *extdata/bam_files/input_0_hg19-filtered.bam
8b8148adb9f17d2736a37afedd48a7d6 *extdata/bam_files/input_100_hg19-filtered.bam
7673e3b31cb43524e138b75c1e159cbf *extdata/bam_files/input_50_hg19-filtered.bam
87573393051fa168552ed7cb39dfe7ef *extdata/bigwig_files/H3K79me2_0-filtered.bw
b39be71651fa682c7ca5e74471b99356 *extdata/bigwig_files/H3K79me2_100-filtered.bw
9484358670dca7886ac5c6b183633858 *extdata/bigwig_files/H3K79me2_50-filtered.bw
8a9d30626ddffebcfcb53d73f109debe *extdata/bigwig_files/input_0-filtered.bw
bf1a116f02a8b755d2090aefccd66726 *extdata/bigwig_files/input_100-filtered.bw
3b9df7633e8119547fcd288983cec485 *extdata/bigwig_files/input_50-filtered.bw
0d8a6330967fd2321f34c569b5c49c76 *extdata/empty_files/endoBam_empty.bam
0d8a6330967fd2321f34c569b5c49c76 *extdata/empty_files/exoBam_empty.bam
d41d8cd98f00b204e9800998ecf8427e *extdata/empty_files/input.wig_empty.bw
d41d8cd98f00b204e9800998ecf8427e *extdata/empty_files/inputwig_empty.bw
d41d8cd98f00b204e9800998ecf8427e *extdata/empty_files/inputwig_empty.wig
d41d8cd98f00b204e9800998ecf8427e *extdata/empty_files/wig.file_empty.bw
d41d8cd98f00b204e9800998ecf8427e *extdata/empty_files/wigfile_empty-RPM.bw
d41d8cd98f00b204e9800998ecf8427e *extdata/empty_files/wigfile_empty.bw
82f6c1a5a915e077d1d5e1fb8ffd5dbd *extdata/fastq_fasta_files/endo.fa
82f6c1a5a915e077d1d5e1fb8ffd5dbd *extdata/fastq_fasta_files/exo.fa
54b6999818010f2f7cb7bd8dec20bbe1 *extdata/fastq_fasta_files/reads1.fastq.gz
4ef102a93caa7e70a8bad42948847a75 *extdata/fastq_fasta_files/reads2.fastq.gz
a009a7951861bd4ba706d2ef0111e2b4 *extdata/info.csv
fdbd4dfbae936b378365d7e043376e5a *extdata/test_coord.gff
1d9f6c9669202dd4a146d02723e429c9 *help/AnIndex
6f0b1697096d821b5e026b2d9b20f002 *help/ChIPSeqSpike.rdb
6142b7e6f95e74c4d8aa55aa61369f9f *help/ChIPSeqSpike.rdx
6bd9be3c54702f63ba302b7f6c21f2c3 *help/aliases.rds
472f16adbb0efbd33ed637cb019e9b54 *help/paths.rds
383eb21c9773249666c23494bf81dac6 *html/00Index.html
e4eaea5c48fc66f6e28049f2f9e36483 *html/ChIPSeqSpikeCore.html
670205fe44f12017e2f7d9a7df270d9a *html/ChIPSeqSpikeDataset-class.html
4f8c03ba95c10c83e89b734d34c699a3 *html/ChIPSeqSpikeDatasetBoost-class.html
22dc534619c6e200b742974aeec5f5e5 *html/ChIPSeqSpikeDatasetList-class.html
45e9bd8b6f19abbd4a30a3b03237a661 *html/ChIPSeqSpikeDatasetListBoost-class.html
d8126422f272df0349bfddcd5ce3769c *html/Experiment-class.html
79919933706676893b66c1a0a2e3c957 *html/ExperimentLoaded-class.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
2e06ad269e10724e8e3350c561692fc8 *html/averageBindingValues.html
4e0149714d0f2a8ac5c889057e5a5396 *html/bigWigFile.html
b3cd185d16c31a4e07edb54fd95cc5f8 *html/boxplotSpike.html
d5f951e6666237a784b7bfdaaae6ed7a *html/count.html
02c3434e2963a508ee369ab01c671f28 *html/datasetList.html
8b9d8ef7ee0e075ae8ac799f0867b664 *html/estimateScalingFactors.html
47465e394a79f55441e23eaad123f792 *html/exoCount.html
292f35ba7e56da2e2a96c06e75e3c0a3 *html/exogenousScalingFactor.html
de2be491db1ff1cc595c1b0da9d5f612 *html/experimentList.html
1e32285a1d68dbf3a833abcd33fecf6b *html/exportBigWigs.html
ff3570388950b1a9452acf6d97f55677 *html/extractBinding.html
3309f58ce01e9578d12db70985cc4967 *html/getAverageBindingValues.html
7035e6da9dee36c63994089b87fd6c5d *html/getBam.html
5c6f0b45e42314330ee496d5ec098989 *html/getBigWigFile.html
4835c0d7f75f853a9fdd4e2bd4a77445 *html/getCount.html
52bc2d5858865eb4cd226ec1c49c4aa4 *html/getDatasetList.html
9b85b4c5bbc3499c6f7a23f9216ebe5a *html/getExoCount.html
5019e88ade85db29590d9898b88b8451 *html/getExogenousBam.html
d32bc210bb469885f55aeb8484464fa0 *html/getExogenousScalingFactor.html
1f875a5e494375ad67639691c16d0d58 *html/getExpName.html
3ef3b53cc1aec947ffd72c32a53cd85f *html/getExperimentList.html
b0e01a4875f33301f8c3d871e131b8ce *html/getExperimentListBigWigs.html
4d79cf07622449aed0ab24881af5544e *html/getLoadedData.html
02ed3f996ad9ba9bf78c8a7e6ea687a4 *html/getMatBindingValues.html
8656263cdad1ce2e6ebd8d3f44e36669 *html/getRatio.html
76ba9c8a93ef45721c0f09b6156c9d4e *html/getScalingFactor.html
df5a4b449c9c4ae52512cb7c0c569dac *html/inputSubtraction.html
e4bd6dd0333d074512de595b4ef176d0 *html/matBindingValues.html
aebd356a9b30bd5720d2fcc9bb55dcc8 *html/plotCor.html
0ea36b1cdb64074e36a1bd70692ae954 *html/plotHeatmaps.html
4a52dbfc442de4691320343b14618f3c *html/plotProfile.html
7cccc0740203661f901a92864d4cdf4b *html/plotTransform.html
9348ac3a622b54ec9e0389ae235c654b *html/ratio.html
6e1c6c41a4b58fd6a00b66386611d258 *html/result_data.html
2063974f2b0c3e55c4db6b80295291db *html/scaling.html
6859c43d1b8e7bca6cfd2416ccf3f891 *html/scalingFactor.html
3a0ce29cb0e4095b9871ff798dca84d9 *html/spikeDataset.html
0d8d26189f94c15634da0c07efa11dfb *html/spikePipe.html
e68bde0ff2cff367e3692a44ec4f672c *html/spikeSummary.html
