orderFluo {CONFESS} | R Documentation

## orderFluo

### Description

It sort the adjusted (and transfomed) fluorescence signals according to the path progression.

### Usage

    orderFluo(data, path.type, updater = FALSE)

### Arguments

`data` | List. A list of adjusted fluorescence signals.
`updater` | Logical. An indicator of the estimation stage. If FALSE the initial groups are analyzed, otherwise the change-point based groups are analyzed.
`path.start` | Integer. A cluster number indicating the starting cluster that algorithm should use to build the path. The cluster numbers refer to the plot generated by Fluo_inspection(). Default is 1. If path.type = "circular" the number does not matter. If path.type = "A2Z" the user should inspect the Fluo_inspection() plot to detect the beginning of the path. If path.type = "other", the function will not estimate a path. The user has to manually insert the path progression (the cluster numbers) in Fluo_modeling() .

### Value

A list with the adjusted fluorescence signals, the centroids, the clusters and the pseudotimes

[Package CONFESS version 1.8.0 Index]