ora_data {CEMiTool}R Documentation

Retrieve over representation analysis (ORA) results

Description

Retrieve over representation analysis (ORA) results

Usage

ora_data(cem)

## S4 method for signature 'CEMiTool'
ora_data(cem)

Arguments

cem

Object of class CEMiTool

Value

Object of class data.frame with ORA data

Examples

# Get example CEMiTool object
data(cem)
# Read gmt file
gmt <- read_gmt(system.file('extdata', 'pathways.gmt',
                   package='CEMiTool'))
# Run module overrepresentation analysis
cem <- mod_ora(cem, gmt)
# Check results
head(ora_data(cem))
[Package CEMiTool version 1.4.2 Index]