BEARscc-package	BEARscc-package
.	report_cell_metrics
.Random.seed	analysis_examples
analysis_examples	analysis_examples
apply_bayes	estimate_noiseparameters
BEARscc	BEARscc-package
BEARscc_clusts.df	analysis_examples
BEARscc_examples	BEARscc_examples
BEAR_analyzed.sce	analysis_examples
BEAR_examples.sce	BEARscc_examples
build_dropoutmodel	estimate_noiseparameters
calculate_cell_metrics	report_cell_metrics
calculate_cell_metrics_by_cluster	report_cell_metrics
calculate_cluster_metrics	report_cluster_metrics
calculate_cluster_metrics_by_cluster	report_cluster_metrics
cleanup_model_names	estimate_noiseparameters
clusters.df	analysis_examples
cluster_consensus	cluster_consensus
compute_alpha	estimate_noiseparameters
compute_consensus	compute_consensus
compute_genewise_dropouts	estimate_noiseparameters
counts2mpc	estimate_noiseparameters
create_cm	compute_consensus
create_null_dropout_model	estimate_noiseparameters
data.counts.df	BEARscc_examples
ERCC.counts.df	BEARscc_examples
ERCC.meta.df	BEARscc_examples
estimate_missingdata	estimate_noiseparameters
estimate_mu2sigma	estimate_noiseparameters
estimate_noiseparameters	estimate_noiseparameters
estimate_undetected2molpercell	estimate_noiseparameters
example_code	simulate_replicates
execute_noiseinjected_counts	simulate_replicates
execute_sim_replicates	simulate_replicates
fill_out_count_probability_table	simulate_replicates
genewise_dropouts	simulate_replicates
gene_name	simulate_replicates
HPC_simulate_replicates	simulate_replicates
iterate_alphas	estimate_noiseparameters
iterate_spikeins	estimate_noiseparameters
L1	report_cluster_metrics
mean.prom	report_cluster_metrics
melt_spikeins	estimate_noiseparameters
noise_consensus	analysis_examples
Overall.mean	report_cluster_metrics
permute_count_in_dropout_range	simulate_replicates
plot_alpha2mu	estimate_noiseparameters
plot_cluster_metrics	report_cluster_metrics
plot_mu2sigma	estimate_noiseparameters
plot_obs2actual	estimate_noiseparameters
plot_spikein_fits	estimate_noiseparameters
prepare_data	estimate_noiseparameters
randomizer	simulate_replicates
recluster	analysis_examples
report_cell_metrics	report_cell_metrics
report_cluster_metrics	report_cluster_metrics
rn	report_cell_metrics
sample_models	estimate_noiseparameters
simulate_replicates	simulate_replicates
size	report_cluster_metrics
subcompute_sample_models	estimate_noiseparameters
subplot_spikein_fits	estimate_noiseparameters
transcripts	estimate_noiseparameters
V1	estimate_noiseparameters
value	report_cluster_metrics
write_noise_model	estimate_noiseparameters
