Class "BCRANKmatch"

Description

Holds the bcrank score for one IUPAC consensus sequence. Several objects of this class are collected in a BCRANKsearch-class object

Objects from the Class

Objects are not intended to be created directly but as a result from running bcrank.

Slots

consensus:

consensus sequence in IUPAC coding

bcrankScore:

bcrank score for the consensus

matchVec:

vector with 0's (no match) and 1's (match) of same length as the ranked DNA sequences

Methods

consensus

signature(object = "BCRANKmatch"): Returns the consensus sequence.

bcrankScore

signature(object = "BCRANKmatch"): Returns the bcrank score.

matchVector

signature(object = "BCRANKmatch"): Returns a vector with 0's (no match) and 1's (match) of same length and order as the ranked DNA sequences.

Author(s)

Adam Ameur, adam.ameur@genpat.uu.se

See Also

bcrank, BCRANKsearch-class