BASiCS_LoadChain {BASiCS}R Documentation

Loads pre-computed MCMC chains generated by the BASiCS_MCMC function

Description

Loads pre-computed MCMC chains generated by the BASiCS_MCMC function, creating a BASiCS_Chain object

Usage

BASiCS_LoadChain(RunName, StoreDir = getwd(), StoreUpdatedChain = FALSE)

Arguments

RunName

String used to index '.Rds' file containing the MCMC chain (produced by the BASiCS_MCMC function, with StoreChains = TRUE)

StoreDir

Directory where '.Rds' file is stored. Default: StoreDir = getwd()

StoreUpdatedChain

Only required when the input files contain an outdated version of a BASiCS_Chain object. If StoreUpdatedChain = TRUE, an updated object is saved (this overwrites original input file, if it was an '.Rds' file).

Value

An object of class BASiCS_Chain.

Author(s)

Catalina A. Vallejos cnvallej@uc.cl

Nils Eling eling@ebi.ac.uk

See Also

BASiCS_Chain

Examples


Data <- makeExampleBASiCS_Data()
Chain <- BASiCS_MCMC(Data, N = 50, Thin = 5, Burn = 5, Regression = FALSE,
                     StoreChains = TRUE, StoreDir = tempdir(), 
                     RunName = 'Test')
ChainLoad <- BASiCS_LoadChain(RunName = 'Test', StoreDir = tempdir())
[Package BASiCS version 1.2.1 Index]