Package: slalom
Type: Package
Title: Factorial Latent Variable Modeling of Single-Cell RNA-Seq Data
Version: 1.2.0
Date: 2018-04-25
Authors@R: c(person("Florian", "Buettner", role=c("aut"),
        email="buettner@ebi.ac.uk"), person("Naruemon",
        "Pratanwanich", role=c("aut"), email="np394@ebi.ac.uk"),
        person("Davis", "McCarthy", role=c("aut", "cre"), email="davis@ebi.ac.uk"),
        person("John", "Marioni", role = c("aut"), email="marioni@ebi.ac.uk"),
        person("Oliver", "Stegle", role = c("aut"), email="stegle@ebi.ac.uk"))
Description: slalom is a scalable modelling framework for single-cell RNA-seq
        data that uses gene set annotations to dissect single-cell transcriptome
        heterogeneity, thereby allowing to identify biological drivers of
        cell-to-cell variability and model confounding factors.
Depends: R (>= 3.4)
Imports: Rcpp (>= 0.12.8), RcppArmadillo, BH, ggplot2, grid, GSEABase,
        methods, rsvd, SingleCellExperiment, SummarizedExperiment,
        stats
Suggests: knitr, rhdf5, scater, testthat
LinkingTo: Rcpp, RcppArmadillo, BH
License: GPL-2
VignetteBuilder: knitr
LazyData: true
Encoding: UTF-8
biocViews: SingleCell, RNASeq, Normalization, Visualization,
        DimensionReduction, Transcriptomics, GeneExpression,
        Sequencing, Software, Reactome
RoxygenNote: 6.0.1
NeedsCompilation: yes
Packaged: 2018-05-01 01:24:17 UTC; biocbuild
Author: Florian Buettner [aut],
  Naruemon Pratanwanich [aut],
  Davis McCarthy [aut, cre],
  John Marioni [aut],
  Oliver Stegle [aut]
Maintainer: Davis McCarthy <davis@ebi.ac.uk>
Built: R 3.5.0; x86_64-apple-darwin15.6.0; 2018-05-01 08:11:43 UTC; unix
