Package: scran
Version: 1.8.4
Date: 2018-08-07
Title: Methods for Single-Cell RNA-Seq Data Analysis
Authors@R: c(person("Aaron", "Lun", role = c("aut", "cre"), email =
        "alun@wehi.edu.au"), person("Karsten", "Bach", role = "aut"),
        person("Jong Kyoung", "Kim", role = "ctb"), person("Antonio", 
        "Scialdone", role="ctb"), person("Laleh", "Haghverdi", 
        role="ctb"))
Maintainer: Aaron Lun <alun@wehi.edu.au>
Depends: R (>= 3.5), BiocParallel, SingleCellExperiment
Imports: SummarizedExperiment, S4Vectors, BiocGenerics, Rcpp (>=
        0.12.14), stats, methods, utils, graphics, grDevices, Matrix,
        scater, edgeR, limma, dynamicTreeCut, FNN, igraph, shiny,
        statmod, ggplot2, DT, viridis, DelayedArray, DelayedMatrixStats
Suggests: testthat, BiocStyle, knitr, beachmat, HDF5Array, limSolve,
        org.Mm.eg.db, DESeq2, monocle, pracma, Biobase, irlba,
        aroma.light
biocViews: Normalization, Sequencing, RNASeq, Software, GeneExpression,
        Transcriptomics, SingleCell, Visualization, BatchEffect,
        Clustering
Description: Implements functions for low-level analyses of single-cell 
        RNA-seq data. Methods are provided for normalization of 
        cell-specific biases, assignment of cell cycle phase, 
        detection of highly variable and significantly correlated genes,
        correction of batch effects, identification of marker genes,
        and other common tasks in single-cell analysis workflows.
License: GPL-3
NeedsCompilation: yes
VignetteBuilder: knitr
SystemRequirements: C++11
LinkingTo: beachmat, Rcpp, Rhdf5lib
Author: Aaron Lun [aut, cre], Karsten Bach [aut], Jong Kyoung Kim [ctb],
        Antonio Scialdone [ctb], Laleh Haghverdi [ctb]
RoxygenNote: 6.0.1
git_url: https://git.bioconductor.org/packages/scran
git_branch: RELEASE_3_7
git_last_commit: bbf1d09
git_last_commit_date: 2018-08-07
Date/Publication: 2018-08-07
Packaged: 2018-08-08 00:44:17 UTC; biocbuild
Built: R 3.5.1; x86_64-apple-darwin15.6.0; 2018-08-08 08:43:49 UTC; unix
