# An R Wrapper for Bowtie2 and AdapterRemoval

## Documentation for package ‘Rbowtie2’ version 1.2.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

adapterremoval_usage | Print available arguments for adapterremoval
adapterremoval_version | Print version information of adapterremoval
bowtie2 | Interface to bowtie2 of bowtie2-2.2.3
bowtie2-build | Interface to bowtie2-build of bowtie2-2.2.3
bowtie2_build | Interface to bowtie2-build of bowtie2-2.2.3
bowtie2_build_usage | Print available arguments for bowtie2_build_usage
bowtie2_usage | Print available arguments for bowtie2
bowtie2_version | Print version information of bowtie2-2.2.3
identify_adapters | identify adapters for paired-end reads
remove_adapters | Interface to bowtie2 of adapterremoval-2.2.1a