Package: ASSIGN
Type: Package
Title: Adaptive Signature Selection and InteGratioN (ASSIGN)
Version: 1.16.0
Date: 2014-10-30
Author: Ying Shen, Andrea H. Bild, W. Evan Johnson, and Mumtehena Rahman
Authors@R: c(person(given="Ying", family="Shen", email="yshen3@bu.edu", role=c("aut")),
             person(given=c("Andrea","H."), family="Bild", email="abild@coh.org", role=c("aut")),
             person(given=c("W.", "Evan"), family="Johnson", email="wej@bu.edu", role=c("aut")),
             person(given="Mumtehena", family="Rahman", email="moom.rahman@utah.edu", role=c("aut")),
             person(given="David", family="Jenkins", email="dfj@bu.edu", role=c("aut","cre")))
Maintainer: Ying Shen <yshen3@bu.edu>, W. Evan Johnson <wej@bu.edu>,
 David Jenkins <dfj@bu.edu>, Mumtehena Rahman <moom.rahman@utah.edu>
Depends: R (>= 3.4)
Description: ASSIGN is a computational tool to evaluate the pathway
    deregulation/activation status in individual patient samples.
    ASSIGN employs a flexible Bayesian factor analysis approach
    that adapts predetermined pathway signatures derived either
    from knowledge-based literature or from perturbation
    experiments to the cell-/tissue-specific pathway signatures.
    The deregulation/activation level of each context-specific
    pathway is quantified to a score, which represents the extent
    to which a patient sample encompasses the pathway
    deregulation/activation signature.
License: MIT + file LICENSE
LazyData: true
Imports: gplots, graphics, grDevices, msm, Rlab, stats, sva, utils,
        ggplot2
biocViews: Software, GeneExpression, Pathways, Bayesian
Suggests: testthat, BiocStyle, knitr, rmarkdown
RoxygenNote: 6.0.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2018-04-30 23:54:25 UTC; biocbuild
Built: R 3.5.0; ; 2018-05-01 07:18:22 UTC; unix
