6e66830f403db799f7faba01f6f0ec19 *DESCRIPTION
bf2817c0527b83690e2b03d383627a5b *INDEX
c32647875577d2a3f9bae08049bdbc96 *Meta/Rd.rds
a46f1debdc1f45796be2b2a0e6b3b378 *Meta/features.rds
b78fc5ff5f16cc8ad2225509927dd122 *Meta/hsearch.rds
fae754530df254cd9c3d0868b38f3162 *Meta/links.rds
a6ca0e516532df361403f663b42fc5d8 *Meta/nsInfo.rds
fc2be2c99606ead1903af91e1f75154c *Meta/package.rds
e50aa9e4739c36247031ddbf6cd3489d *Meta/vignette.rds
a85b065a4ae26aeb399f82bcf6acf8a0 *NAMESPACE
d41d8cd98f00b204e9800998ecf8427e *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/trena
bb3323139ac02086a2289e29d1144334 *R/trena.rdb
b5974c516a8397c8c9a7bb1bb71cd823 *R/trena.rdx
90c0e8bfa2cf7ddd6468bd93728e0c4a *demos/Assess_Distributions.ipynb
d0f8ec216d6c5aa9c540a052384ded31 *demos/demoEnhancersDatabaseOnWhovian.R
7c46291e2d18d5c393cb0cb81a2c690e *demos/findPiez02RegulatorySnps.R
b963c9b3eeea35773d15e78140755fdc *demos/findTFs.R
568941e705e2d2e48d19fc8515c3a7ee *demos/runLassoSolver.R
f3f08b552e7b655835830eeee69808c6 *demos/test.png
7c1db56b0472c25a4c1bd94c36ffd586 *demos/trem2/go.R
c918597303c2a8f91fa056416612faa0 *doc/TReNA_Vignette.R
06b5f14261335b5fd3c49886dbb0256b *doc/TReNA_Vignette.Rmd
0504d320a66737504aebd74b851c9d3f *doc/TReNA_Vignette.html
6b48a0b1dd9842638f3d4ea1ee14c5ee *doc/index.html
55f2fbcdca4a18aa169b1d32bacadf25 *extdata/all_motifs.meme
4210742ee291565ffb4dcff88f735231 *extdata/ampAD.154genes.mef2cTFs.278samples.RData
dbead999a8d9f52a1333a83c9820b25f *extdata/ampAD.58genes.mef2cTFs.278samples.RData
1a07499c5ce7cb687bb3afa7212711ed *extdata/human.regulatory.genes.RData
8599edf9f31e819ec9930cb925d3f89b *extdata/mef2c.neigborhood.hg38.footprints.db
dae3572ee80040f26811a88e558aafa1 *extdata/mef2c.neighborhood.hg38.gtfAnnotation.db
2f431edaf8b630f45390b4a6b772985c *extdata/vrk2.neigborhood.hg38.footprints.db
9cc8f2194355bff535d157549af9f183 *extdata/vrk2.neighborhood.hg38.gtfAnnotation.db
e942c1e6fe9136e3008fc2191a4ec77b *extdata/yeast-53genes-536-samples.RData
82f58d326b920005c955c08ba4fafb88 *help/AnIndex
b09d9d197b293ab26386af08fa535915 *help/aliases.rds
ceb824daaf4fff1e2563151a6efe6c30 *help/paths.rds
36f69c23ae61b25f7d4baf16559f592b *help/trena.rdb
407e297166a812c920faad2154cb9488 *help/trena.rdx
0006d149e146764c506e80fe7775e533 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
5044331f65d1b794c79823478f348a4d *misc/createSQLiteDB.R
49dd7794824f19fffead817eed129895 *misc/footprintFinding/piq/makefile
6f962e99ba3a23ec481825bfcf7a32bb *misc/makeTRN-proximalanddistal-demo.R
e144e6dba9d76f1b04b750da054ecb8b *misc/makeTRN-proximalonly-demo.R
0d84813f34a485b92f0f52fdaee06f9c *misc/monteCarloTRN.R
8b53ed55a12d12ef81f6bf21a072fdf0 *misc/multiModels/aqp4-multi.R
8645078c3a201a42f3e7fbc93b19ed04 *misc/multiModels/aqp4.R
ef215e2597fabe5491abeeed88a2dc25 *misc/multiModels/graphToJSON-devel.R
7b6e81ed9ee151e7cdbc5d2e670895d5 *misc/multiModels/style.js
8379f576fb8b820a736fa10d92870ca9 *misc/profileDbQueries.R
dcfd3fb17c5cf72305bd02cf22c14004 *misc/runTReNA-demo.R
7be14cd38bf61ba16f2339fe39b440e9 *notes/fillEnhancerDatabase.txt
613cfa517ad81870727b8373222555bd *prep/dream5.yeast/createTestData.R
093598ccd4ad4d80800718e4f5af5750 *unitTests/test_BayesSpikeSolver.R
d7572d9d4166a897aebd7f11ded7eb52 *unitTests/test_CandidateFilter.R
3bbe143d8d7d0152b38522e7f691c7ae *unitTests/test_EnsembleSolver.R
52e8e0b926cc5694cfcc782237866c60 *unitTests/test_FootprintFilter.R
52667d0983089ac497565092846bf014 *unitTests/test_FootprintFinder.R
73e8f528dbc4d8b1fb69e901b4e74ece *unitTests/test_GeneOntologyFilter.R
f90a8a1f1fdb5b6d9f17fa814c3c3bca *unitTests/test_HumanDHSFilter.R
0e16bb6118eb2460b159451c32fb18ad *unitTests/test_LassoPVSolver.R
758dfb857b4b9f481df24b999c07fc35 *unitTests/test_LassoSolver.R
25cba485e4c285530d7969b348820313 *unitTests/test_MotifMatcher.R
80cf666d91c45d2cfda966ee50498ebe *unitTests/test_PearsonSolver.R
76071573d76de29d7c3e71b0c055aa00 *unitTests/test_RandomForestSolver.R
0f1895361c9fd3d6ee6687b35a8b55ab *unitTests/test_RidgeSolver.R
ef7496b29ef37533dd0baee8dde6d5ec *unitTests/test_Solver.R
f43cf1407d9ccb3b98cd88bc3fe34cb5 *unitTests/test_SpearmanSolver.R
5b3616d5bddea6e0873dc3337d8ad730 *unitTests/test_SqrtLassoSolver.R
bcf421e2d032bc453b8c52ba03f90f87 *unitTests/test_Trena.R
1fa0d3cb87a0a3fcf9b8f5b4f511dc23 *unitTests/test_VarianceFilter.R
d3dcc060dfeec38a7bdadd57fbb5f240 *utils/NaiveSolver.R
d8c3d1f6cdcbb2fbfacde275219ed822 *utils/TReNA.R
8349495ac8d9523ed3406b1fa21ca319 *utils/additionalTReNATests.R
9650189a5236a77e62a563cae12b5b01 *utils/createGenomeScaleModel.R
51ea04c75256d2fdfee3d9ed28fa4c0b *utils/createGlobusTable.R
ab8512ee1fddb60713e979fe54e30c7c *utils/currentDBs.html
ab691993403cf6bb6702e5c61277d37b *utils/determineSqrtLambda.R
86c5eaf9ff52d63462fd7da4df83d141 *utils/evaluateAllSolvers.R
8bf84364e45060a1e4a4a77f68da9c07 *utils/extraFunctions.R
8e0cdefe1df4a74c1fba812d0f563dad *utils/runTReNA.R
380c5331c759be0cf1b15cdb5788845f *utils/test_NaiveSolver.R
c3abc15e40ab1f23ded844d454f8de2f *utils/test_TReNA.R
187c3d72fa9e8de13ed98e58da1d384d *utils/test_runTReNA.R
