processing of ontologies of anatomy, cell lines, and so on

Documentation for package ‘ontoProc’ version 1.0.0

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allGOterms	allGOterms: data.frame with ids and terms
c-method	combine TermSet instances
cellTypeToGenes	utilities for approximate matching of cell type terms to GO categories and annotations
cellTypeToGO	utilities for approximate matching of cell type terms to GO categories and annotations
children_TAG	generate a TermSet with siblings of a given term, excluding that term by default
demoApp	demonstrate the use of makeSelectInput
fastGrep	some fields of interest are lists, and grep per se should not be used - this function checks and uses grep within vapply when appropriate
getCellLineOnto	load ontologies that may include non-ascii strings and therefore cannot be in data folder
getCellOnto	load ontologies that may include non-ascii strings and therefore cannot be in data folder
getCellosaurusOnto	load ontologies that may include non-ascii strings and therefore cannot be in data folder
getChebiLite	load ontologies that may include non-ascii strings and therefore cannot be in data folder
getChebiOnto	load ontologies that may include non-ascii strings and therefore cannot be in data folder
getEFOOnto	load ontologies that may include non-ascii strings and therefore cannot be in data folder
getUBERON_NE	load ontologies that may include non-ascii strings and therefore cannot be in data folder
label_TAG	generate a TermSet with siblings of a given term, excluding that term by default
makeSelectInput	generate a selectInput control for an ontologyIndex slice
secLevGen	simple generation of children of 'choices' given as terms, returned as TermSet
show	manage ontological data with tags and a DataFrame instance
show-method	manage ontological data with tags and a DataFrame instance
siblings_TAG	generate a TermSet with siblings of a given term, excluding that term by default
TermSet-class	manage ontological data with tags and a DataFrame instance