tranform the flow data asssociated with the GatingSet

Description

The transformation functions are saved in the GatingSet and can be retrieved by getTransformations. Currently only flowJo-type biexponential transformation(either returned by getTransformations or constructed by flowJoTrans) is supported.

Usage

## S4 method for signature 'GatingSet'
transform(`_data`, translist, ...)

## S4 method for signature 'GatingSetList'
transform(`_data`, ...)

Arguments

Value

a GatingSet or GatingSetList object with the underling flow data transformed.

Examples

## Not run: 
data(GvHD)
fs <- GvHD[1:2]
gs <- GatingSet(fs)

#construct biexponential transformation function
biexpTrans <- flowJo_biexp_trans(channelRange=4096, maxValue=262144, pos=4.5,neg=0, widthBasis=-10)

#make a transformList object
chnls <- c("FL1-H", "FL2-H")
transList <- transformerList(chnls, biexpTrans)

#add it to GatingSet
gs_trans <- transform(gs, transList)


## End(Not run)