# Generated by roxygen2: do not edit by hand

export(ClusterX)
export(DensVM)
export(Rphenograph)
export(cytof_addToFCS)
export(cytof_cluster)
export(cytof_clusterMtrx)
export(cytof_clusterPlot)
export(cytof_clusterStat)
export(cytof_colorPlot)
export(cytof_dimReduction)
export(cytof_exprsExtract)
export(cytof_exprsMerge)
export(cytof_heatmap)
export(cytof_progression)
export(cytof_progressionPlot)
export(cytof_writeResults)
export(cytofkit)
export(cytofkitNews)
export(cytofkitShinyAPP)
export(cytofkit_GUI)
export(launchShinyAPP_GUI)
export(spectral1)
export(spectral2)
import(shiny)
import(shinyFiles)
import(stats)
import(tcltk)
importClassesFrom(flowCore,transformList)
importFrom(Biobase,"description<-")
importFrom(Biobase,"exprs<-")
importFrom(Biobase,"pData<-")
importFrom(Biobase,description)
importFrom(Biobase,exprs)
importFrom(Biobase,pData)
importFrom(FlowSOM,SOM)
importFrom(FlowSOM,metaClustering_consensus)
importFrom(RANN,nn2)
importFrom(Rcpp,sourceCpp)
importFrom(Rtsne,Rtsne)
importFrom(VGAM,sm.ns)
importFrom(VGAM,vgam)
importFrom(colourpicker,colourInput)
importFrom(destiny,DiffusionMap)
importFrom(doParallel,registerDoParallel)
importFrom(e1071,svm)
importFrom(flowCore,arcsinhTransform)
importFrom(flowCore,biexponentialTransform)
importFrom(flowCore,compensate)
importFrom(flowCore,estimateLogicle)
importFrom(flowCore,flowFrame)
importFrom(flowCore,inverseLogicleTransform)
importFrom(flowCore,logicleTransform)
importFrom(flowCore,parameters)
importFrom(flowCore,read.FCS)
importFrom(flowCore,transformList)
importFrom(flowCore,write.FCS)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,annotate)
importFrom(ggplot2,arrow)
importFrom(ggplot2,coord_fixed)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_line)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_rug)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggsave)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,scale_colour_gradientn)
importFrom(ggplot2,scale_colour_manual)
importFrom(ggplot2,scale_shape_manual)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,unit)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(ggrepel,geom_text_repel)
importFrom(gplots,bluered)
importFrom(gplots,heatmap.2)
importFrom(grDevices,cm.colors)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,dev.copy2pdf)
importFrom(grDevices,dev.off)
importFrom(grDevices,heat.colors)
importFrom(grDevices,pdf)
importFrom(grDevices,rainbow)
importFrom(grDevices,terrain.colors)
importFrom(grDevices,topo.colors)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(igraph,cluster_louvain)
importFrom(igraph,graph.data.frame)
importFrom(igraph,membership)
importFrom(igraph,modularity)
importFrom(methods,is)
importFrom(parallel,detectCores)
importFrom(parallel,makeCluster)
importFrom(parallel,stopCluster)
importFrom(pdist,pdist)
importFrom(plyr,.)
importFrom(plyr,ddply)
importFrom(plyr,llply)
importFrom(reshape2,dcast)
importFrom(reshape2,melt)
importFrom(stats,aggregate)
importFrom(utils,compareVersion)
importFrom(utils,packageVersion)
importFrom(utils,read.table)
importFrom(utils,write.csv)
importFrom(vegan,isomap)
importFrom(vegan,spantree)
importFrom(vegan,vegdist)
importMethodsFrom(flowCore,keyword)
importMethodsFrom(flowCore,transform)
useDynLib(cytofkit)
