| build_gene_annots {annotatr} | R Documentation |
Using the TxDb.* group of packages, construct genic annotations consisting of any combination of 1-5kb upstream of a TSS, promoters (< 1kb from TSS), 5UTRs, CDS, exons, first exons, introns, intron/exon and exon/intron boundaries, 3UTRs, and intergenic.
build_gene_annots(genome = annotatr::builtin_genomes(), annotations = annotatr::builtin_annotations())
genome |
The genome assembly. |
annotations |
A character vector with entries of the form |
A list of GRanges objects with unique id of the form [type]:i, tx_id being the UCSC knownGene transcript name, gene_id being the Entrez Gene ID, symbol being the gene symbol from the Entrez ID to symbol mapping in org.db for that species, and type being the annotation type.