useDynLib(TitanCNA)
import(IRanges,GenomicRanges,foreach,GenomeInfoDb,Rsamtools,data.table,dplyr,VariantAnnotation)
export(loadAlleleCounts,loadDefaultParameters,
		filterData,getPositionOverlap,wigToRangedData,
		outputTitanResults,outputModelParameters,correctReadDepth,
		runEMclonalCN, viterbiClonalCN,computeSDbwIndex,
		plotAllelicRatio,plotClonalFrequency,plotCNlogRByChr,
		plotSubcloneProfiles, outputTitanSegments,
		setGenomeStyle,plotSegmentMedians,
		loadHaplotypeAlleleCounts,plotHaplotypeFraction)
