rnb.region.types {RnBeads}R Documentation

rnb.region.types

Description

Gets the supported region annotations for a given genome assembly.

Usage

rnb.region.types(assembly = "hg19")

Arguments

assembly

Genome assembly of interest. See rnb.get.assemblies for the list of supported genomes.

Value

Region types supported by RnBeads in the form of a character vector. The built-in ones are "cpgislands", "genes", "promoters" and "tiling". The names of all custom region definitions are also included in the returned vector.

Author(s)

Yassen Assenov

See Also

rnb.get.annotation, rnb.set.annotation

Examples


"promoters" %in% rnb.region.types() # TRUE
[Package RnBeads version 1.10.8 Index]