procona-package	procona-package
adj	accessors
adj,proconaNet-method	accessors
adj<-	accessors
adj<-,proconaNet-method	accessors
bootstrapProconaNetwork	bootstrapProconaNetwork
buildProconaNetwork	buildProconaNetwork
c2i	c2i
colorOrder	accessors
colorOrder,proconaNet-method	accessors
colorOrder<-	accessors
colorOrder<-,proconaNet-method	accessors
compareNetworksWithFishersExactTest	compareNetworksWithFishersExactTest
compareNetworksWithFishersExactTest,character,character,numeric,numeric,character,character,character-method	compareNetworksWithFishersExactTest
compareNetworksWithFishersExactTestProcona	compareNetworksWithFishersExactTestProcona
compareNetworksWithFishersExactTestProcona,proconaNet,proconaNet,character-method	compareNetworksWithFishersExactTestProcona
corBootstrap	corBootstrap
correlationWithPhenotypesHeatMap	correlationWithPhenotypesHeatMap
correlationWithPhenotypesHeatMap,proconaNet,matrix,numeric,character,character,numeric-method	correlationWithPhenotypesHeatMap
dynamicColors	accessors
dynamicColors,proconaNet-method	accessors
dynamicColors<-	accessors
dynamicColors<-,proconaNet-method	accessors
getFisherMatrix	getFisherMatrix
getFisherMatrix,character,character,numeric,numeric-method	getFisherMatrix
getPeptideNAs	getPeptideNAs
goStatTest	goStatTest
goStatTest,proconaNet,numeric,data.frame,character,character,character,character,character,numeric,logical-method	goStatTest
hclust-class	hclust
i2c	i2c
i2col	i2col
masstagdb	ProCoNA_Data
mergedColors	accessors
mergedColors,proconaNet-method	accessors
mergedColors<-	accessors
mergedColors<-,proconaNet-method	accessors
mergedMEs	accessors
mergedMEs,proconaNet-method	accessors
mergedMEs<-	accessors
mergedMEs<-,proconaNet-method	accessors
MEs	accessors
MEs,proconaNet-method	accessors
MEs<-	accessors
MEs<-,proconaNet-method	accessors
MMvsPS	MMvsPS
MMvsPS,proconaNet,matrix,numeric,numeric-method	MMvsPS
MMvsPSallModules	MMvsPSallModules
MMvsPSallModules,proconaNet,matrix,numeric,character-method	MMvsPSallModules
moduleMemberCorrelations	moduleMemberCorrelations
moduleMemberCorrelations,proconaNet,matrix,matrix-method	moduleMemberCorrelations
modulePhenotypeCorrelations	modulePhenotypeCorrelations
modulePhenotypeCorrelations,proconaNet,matrix-method	modulePhenotypeCorrelations
net1	ProCoNA_Data
net2	ProCoNA_Data
networkName	accessors
networkName,proconaNet-method	accessors
networkName<-	accessors
networkName<-,proconaNet-method	accessors
networkPower	accessors
networkPower,proconaNet-method	accessors
networkPower<-	accessors
networkPower<-,proconaNet-method	accessors
networkType	accessors
networkType,proconaNet-method	accessors
networkType<-	accessors
networkType<-,proconaNet-method	accessors
orderMatrixIndex	orderMatrixIndex
pepnet	accessors
pepnet-class	accessors
peptideConnectivityTest	peptideConnectivityTest
peptideConnectivityTest,proconaNet,data.frame,character,character,numeric-method	peptideConnectivityTest
peptideCorrelationTest	peptideCorrelationTest
peptideCorrelationTest,matrix,data.frame,character,character-method	peptideCorrelationTest
peptideData	ProCoNA_Data
peptides	accessors
peptides,proconaNet-method	accessors
peptides<-	accessors
peptides<-,proconaNet-method	accessors
pepTree	accessors
pepTree,proconaNet-method	accessors
pepTree<-	accessors
pepTree<-,proconaNet-method	accessors
permtest	accessors
permtest,proconaNet-method	accessors
permtest<-	accessors
permtest<-,proconaNet-method	accessors
phenotypes	ProCoNA_Data
plotNet	plotNet
power	accessors
power,proconaNet-method	accessors
power<-	accessors
power<-,proconaNet-method	accessors
ppiPermTest	ppiPermTest
ppiPermTest,proconaNet,matrix,data.frame,character,character,data.frame,numeric,numeric-method	ppiPermTest
print,proconaNet-method	proconaNet-class
printNet	printNet
proconaNet	proconaNet-class
proconaNet-class	proconaNet-class
proconaVersion	accessors
proconaVersion,proconaNet-method	accessors
proconaVersion<-	accessors
proconaVersion<-,proconaNet-method	accessors
proconaVersionFun	proconaVersionFun
runningStats	runningStats
samples	accessors
samples,proconaNet-method	accessors
samples,proconaNet-methods	accessors
samples<-	accessors
samples<-,proconaNet-method	accessors
samples<-,proconaNet-methods	accessors
show,proconaNet-method	proconaNet-class
subsetModCors	subsetModCors
subsetPeptideData	subsetPeptideData
TOM	accessors
TOM,proconaNet-method	accessors
TOM<-	accessors
TOM<-,proconaNet-method	accessors
toPermTest	toPermTest
toPermTest,proconaNet,numeric-method	toPermTest
universe	ProCoNA_Data
utri	utri
