col_by_value            col_by_value
convertId               convertId
download_KEGGfile       download_KEGGfile
download_latest_pathway
                        download_latest_pathway
find_enriched_pathway   find_enriched_pathway
newIdMatrix             newIdMatrix
parse_XMLfile           parse_XMLfile
pho_sites_count         number of phosphorylation sites quantified for
                        each gene
plot_pathway            plot_pathway
plot_pathway_cor        plot_pathway_cor
plot_profile            plot_profile
pro_pho_expr            expression profiles in proteome and
                        phosphoproteome
