# Generated by roxygen2: do not edit by hand

export(CDFfromGTF)
export(EventDetection)
export(EventPointer)
export(EventPointer_IGV)
export(EventPointer_RNASeq)
export(EventPointer_RNASeq_IGV)
export(PrepareBam_EP)
import(Matrix)
import(SGSeq)
import(SummarizedExperiment)
importFrom('methods',is)
importFrom(GenomeInfoDb,'seqlevelsStyle<-')
importFrom(GenomeInfoDb,seqlevelsStyle)
importFrom(GenomeInfoDb,seqnames)
importFrom(GenomicFeatures,makeTxDbFromBiomart)
importFrom(GenomicFeatures,makeTxDbFromGFF)
importFrom(GenomicFeatures,makeTxDbFromUCSC)
importFrom(GenomicRanges,makeGRangesFromDataFrame)
importFrom(MASS,Null)
importFrom(MASS,ginv)
importFrom(RBGL,connectedComp)
importFrom(S4Vectors,queryHits)
importFrom(S4Vectors,subjectHits)
importFrom(affxparser,writeCdf)
importFrom(doParallel,registerDoParallel)
importFrom(foreach,"%dopar%")
importFrom(foreach,foreach)
importFrom(graph,ftM2graphNEL)
importFrom(igraph,as_adj)
importFrom(igraph,clusters)
importFrom(igraph,graph.data.frame)
importFrom(igraph,graph_from_adjacency_matrix)
importFrom(igraph,graph_from_data_frame)
importFrom(limma,contrasts.fit)
importFrom(limma,eBayes)
importFrom(limma,lmFit)
importFrom(limma,topTable)
importFrom(limma,voom)
importFrom(matrixStats,rowMaxs)
importFrom(methods,as)
importFrom(nnls,nnls)
importFrom(prodlim,row.match)
importFrom(stats,dist)
importFrom(stats,qnorm)
importFrom(stats,quantile)
importFrom(stats,runif)
importFrom(stringr,str_count)
importFrom(utils,combn)
importFrom(utils,read.delim)
importFrom(utils,read.table)
importFrom(utils,setTxtProgressBar)
importFrom(utils,txtProgressBar)
importFrom(utils,write.table)
