addDistNearestTSS {ELMER}R Documentation

Calculate the distance between probe and gene TSS

Description

Calculate the distance between probe and gene TSS

Usage

addDistNearestTSS(data, NearGenes, cores = 1)

Arguments

data

A multi Assay Experiment with both DNA methylation and gene Expression objects

NearGenes

A list or a data frame with the pairs gene probes

cores

Number fo cores to be used. Deafult: 1

Examples

## Not run: 
 data <- ELMER:::getdata("elmer.data.example")
  NearbyGenes <- GetNearGenes(data = data, 
                              probes = c("cg15924102", "cg24741609"),  
                              numFlankingGenes = 20)
  NearbyGenes <- addDistNearestTSS(data,NearbyGenes)
  NearbyGenes <- addDistNearestTSS(data,NearbyGenes[[1]])

## End(Not run)
[Package ELMER version 2.2.7 Index]