as.DESeqDataSet {DEFormats}R Documentation

Convert to DESeqDataSet

Description

Coerces an object to DESeqDataSet.

Usage

as.DESeqDataSet(x, ...)

## S3 method for class 'DGEList'
as.DESeqDataSet(x, ...)

Arguments

x

an R object

...

additional arguments to be passed to methods

Value

A DESeqDataSet object

Methods (by class)

Author(s)

Andrzej Oleś <andrzej.oles@embl.de>, 2016-2017

See Also

as.DGEList

Examples

require("edgeR")

counts = simulateRnaSeqData()
group = rep(c("case", "control"), each = 3)

dge = DGEList(counts = counts, group = group)
dge

as.DESeqDataSet(dge)
[Package DEFormats version 1.6.1 Index]