batchqc_circosplot {BatchQC}R Documentation

Produce Circos plot

Description

Produce Circos plot

Usage

batchqc_circosplot(dat, batch, AggMethod)

Arguments

dat

Given data or simulated data from rnaseq_sim()

batch

Batch covariate

AggMethod

Aggregation Method

Value

Generates Circular Dendrogram plot for the given data

Examples

nbatch <- 3
ncond <- 2
npercond <- 10
data.matrix <- rnaseq_sim(ngenes=50, nbatch=nbatch, ncond=ncond, npercond=
    npercond, basemean=10000, ggstep=50, bbstep=2000, ccstep=800, 
    basedisp=100, bdispstep=-10, swvar=1000, seed=1234)
batch <- rep(1:nbatch, each=ncond*npercond)
batchqc_circosplot(data.matrix, batch=batch, AggMethod='complete')
[Package BatchQC version 1.6.1 Index]