BEclear                 Matrix prediction method using a Latent Factor
                        Model
BEclear example data    Example data set for the BEclear-package
BEclear-package         Correct for batch effects in DNA methylation
                        data
calcMedians             Calculate median difference values
calcPvalues             Calculate p-values
calcScore               calculate batch effect score
calcSummary             Summarize median comparison and p-value
                        calculation results
clearBEgenes            Prepare a data matrix for the BEclear function
correctBatchEffect      Correct a batch effect in DNA methylation data
countValuesToPredict    Count NA entries in a matrix
ex.corrected.data       Example matrix of corrected data for the
                        BEclear-package
findWrongValues         Find DNA methylation values out of the
                        boundaries
makeBoxplot             produce simple predefined boxplot for
                        methylation data
replaceWrongValues      Replace DNA methylation values out of the
                        boundaries
