AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)

Documentation for package ‘AUCell’ version 1.0.0

aucellResults	Wrapper to the matrix that stores the AUC or the cell rankings.
aucellResults-class	Wrapper to the matrix that stores the AUC or the cell rankings.
AUCell_buildRankings	Build gene expression rankings for each cell
AUCell_buildRankings-method	Build gene expression rankings for each cell
AUCell_calcAUC	Calculate AUC
AUCell_calcAUC-method	Calculate AUC
AUCell_exploreThresholds	AUCell_exploreThresholds
AUCell_plot	Plot AUC histogram
getAUC	Wrapper to the matrix that stores the AUC or the cell rankings.
getAUC-method	Wrapper to the matrix that stores the AUC or the cell rankings.
getRanking	Wrapper to the matrix that stores the AUC or the cell rankings.
getRanking-method	Wrapper to the matrix that stores the AUC or the cell rankings.
nGenes	GeneSet methods
nGenes-method	GeneSet methods
plotGeneCount	plotGeneCount
setGeneSetNames	GeneSet methods
setGeneSetNames-method	GeneSet methods
show	Wrapper to the matrix that stores the AUC or the cell rankings.
show-method	Wrapper to the matrix that stores the AUC or the cell rankings.
subsetGeneSets	GeneSet methods
subsetGeneSets-method	GeneSet methods
updateAucellResults	Update AUCell results