GenomeInfo-class        Class "genomeInfo"
MapFilterProbe-class    Class "MapFilterProbe"
WaveTilingFeatureSet-class
                        Class "WaveTilingFeatureSet"
WfmFit-class            Class "WfmFit"
WfmFitCircadian-class   Class "WfmFitCircadian"
WfmFitCustom-class      Class "WfmFitCustom"
WfmFitFactor-class      Class "WfmFitFactor"
WfmFitTime-class        Class "WfmFitTime"
WfmInf-class            Class "WfmInf"
WfmInfCompare-class     Class "WfmInfCompare"
WfmInfCustom-class      Class "WfmInfCustom"
WfmInfEffects-class     Class "WfmInfEffects"
WfmInfMeans-class       Class "WfmInfMeans"
WfmInfOverallMean-class
                        Class "WfmInfOverallMean"
addPheno                Add phenotypic info to 'WaveTilingFeatureSet'
bgCorrQn                Background correction and quantile
                        normalization
cel2TilingFeatureSet    Read CEL-files to TilingFeatureSet
filterOverlap           function to filter probe sequence overlaps and
                        remap probes
getNonAnnotatedRegions
                        Get non-annotated regions
getSigGenes             Get significant genes
makeContrasts           Construct contrast matrix
makeDesign              Construct design matrix
plotWfm                 plot model fit and genomic regions
selectProbesFromFilterOverlap
                        select probes from 'MapFilterProbe' object
selectProbesFromTilingFeatureSet
                        select probes from 'WaveTilingFeatureSet'
                        object
wfm.fit                 Fit Wfm model to trancriptome data
wfm.inference           Perform transcriptome analysis on fitted
                        wavelet-based functional model
