53350c7e553466831cabd24503f42c56 *CITATION
95c34db4e3f80cb98e79f70268058f0e *DESCRIPTION
ccd43c6f56ddd64e6b846ae592c69c52 *INDEX
dea2d41333ef934c9ed80e477a00c94e *Meta/Rd.rds
f85f8a9855ed9ce73530e5baf774a339 *Meta/features.rds
9c54029c745194ba8cfbad1775cbadc7 *Meta/hsearch.rds
216507aba68a2d19aa4cd81961479c24 *Meta/links.rds
96a2681218966f62802e35f57f2450c1 *Meta/nsInfo.rds
c184abad70602efe5a1d1b497e695887 *Meta/package.rds
d1cf34939d392016a326ce0da28153e7 *Meta/vignette.rds
560136214583c3f5f5d71fde970fb626 *NAMESPACE
d3404eca82b5dd31f0bac8c050b709e1 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/systemPipeR
2cc10ed2b2c49aedfcae9b7e270f1dd5 *R/systemPipeR.rdb
d146322ab1b0a44cd39666ca271256e3 *R/systemPipeR.rdx
6e6201c97e0b49506698477c45a21d3f *doc/index.html
5e9acdfa5c2af8498bf3719f7023c772 *doc/systemPipeChIPseq.R
673bdba32a9dd5395a412a79a0740423 *doc/systemPipeChIPseq.Rnw
2d0dc8f2e97ff88b5d06eab486ada88b *doc/systemPipeChIPseq.pdf
89118663f38ea38141f0b3c7f443620b *doc/systemPipeR.R
3144c7eae84d97cd2db90cb3b141fcc0 *doc/systemPipeR.Rmd
0f0f02c7d6b825700fd3d9c0bfd1e97e *doc/systemPipeR.html
ff8c1c72cd9e95df12b7b51df7fed2e2 *doc/systemPipeRIBOseq.R
24ca2ebe7700819a103c4006657ff146 *doc/systemPipeRIBOseq.Rnw
5761898ac5cc11c61e474c946261f283 *doc/systemPipeRIBOseq.pdf
3d33afce7084bd46dc0f67a69e2d790c *doc/systemPipeRNAseq.R
cac6207a2d5bef07c0bdc40e712edc55 *doc/systemPipeRNAseq.Rnw
e98ef469a3f81eac1556b6b3cfa4f987 *doc/systemPipeRNAseq.pdf
f5707bf46c284ae319262927e8371494 *doc/systemPipeVARseq.R
ad5e495817f2d8fcf9bff5dddf44a37e *doc/systemPipeVARseq.Rnw
1b0ed65d2faa04a5b1fac2392aa5c392 *doc/systemPipeVARseq.pdf
c08527c167f3a42f17564ea653dd9842 *extdata/Makefile
78dda8645d323b468922f7e483be4c9c *extdata/alignStats.xls
f11c8bb8f32228337b590ea3f00b3ea1 *extdata/annotate_peaks.param
2930ca439a416d3be1692445c4570ae2 *extdata/annotate_vars.param
3dd1314bc7adebaf6a5e5c6baf32422a *extdata/bowtiePE.param
5ab954737e604f7db27511ad75bcd8d9 *extdata/bowtieSE.param
aae4033870a0ef00a873be0b1b057f76 *extdata/bwa.param
784a3074752b394df008f0fb9e6ab9fc *extdata/countDFeByg.xls
c6911d9f8ebc54a6775821f1dc44286a *extdata/count_rangesets.param
b430bc8fb548a51d84917a8c587280e6 *extdata/custom_Fct.R
54e3d6c10356c74053ca1924b8576e21 *extdata/filter_gatk.param
7dcf24ed0132ec529de84fd04c14b202 *extdata/filter_sambcf.param
7cccff803c025141d49159ebe402aece *extdata/filter_vartools.param
78703d16e099b08f184a7b0cae1f08a0 *extdata/gatk.param
b394006139d9d91099117f3916fc4c31 *extdata/gatk_run.sh
ee61c831d0762f41d6182fb4e2d36c8a *extdata/gsnap.param
f95f0134cbad66a16c8307056a8ab4cc *extdata/macs2.param
dca9b2f81e39bad7b57af01f094bc56e *extdata/macs2_noinput.param
9cca89e6cd2ea6e3b8a4e3037d2891e3 *extdata/rpkmDFeByg.xls
3d30cad15d64aebc718192ef099fecd5 *extdata/rsubread.param
7004f0a88e037520b4a65ddd9a85999e *extdata/rundiff.param
205f33a7c2dfc67418ec0303621a141c *extdata/sambcf.param
939b5de645b9bb23b26564c42cc90b10 *extdata/sambcf_run.sh
6a293e6427d28d966002a9c20d65540a *extdata/slides/bibtex.bib
087e13be9dfae45df3468f9c0049b90a *extdata/slides/images/SystemPipeR_Workflow.png
d7b983bf69631cf7963e8f2ea6c987a0 *extdata/slides/logo.png
22a6080cb58587575f1b56f57ad4f571 *extdata/slides/systemPipeRslides.R
2b8f9796b104d578260f7988e50f0a1d *extdata/slides/systemPipeRslides.Rmd
a16f3f93be83e668f9b165be9824c131 *extdata/slides/systemPipeRslides.html
f538b097c9d1298b0ad2ee12081327d0 *extdata/targets.txt
c7084088a32f4beab1eede51d7bb8685 *extdata/targetsPE.txt
0286b968b47dda425f99c9efac4b094d *extdata/targetsPE_chip.txt
9e33954fb66979808b9d389cff6bdcf5 *extdata/targets_chip.txt
c67415d483577a02b783755824ba886f *extdata/tophat.param
1cd9d053915ae7212759294de6db92d9 *extdata/torque.tmpl
5b96dca6a17c61b43b5db71e20b54c30 *extdata/trim.param
a3f4e242449c101af6f2c9056696d3a1 *extdata/trimPE.param
f57aa9edff5506cc819e15368b8ab9ad *extdata/vartools.param
38357f2f736b49caed8f00effbe9e79e *extdata/vignette_archive/systemPipeR.R
ef5aaa34ad938f22360e6998e438ddf5 *extdata/vignette_archive/systemPipeR.Rnw
73b973ce72224e24ff0d9fd1408c96ab *extdata/vignette_archive/systemPipeR.pdf
849eabd50f0470c13cb7159861ff16f8 *help/AnIndex
053d0ccd67d9aa9333aabca5eeb438ba *help/aliases.rds
c408274c500cd554c2c2c039f582eb42 *help/paths.rds
8b74614a11c6c9cc54e1fe18d3f81614 *help/systemPipeR.rdb
a6a989e47767bc40c011a6875c3e9fc7 *help/systemPipeR.rdx
22ccbd679ea966019276e9882e7d60a6 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
f02e326f800ee26f04df7961adbf7c0a *unitTests/SRR446027_1.fastq
f02e326f800ee26f04df7961adbf7c0a *unitTests/SRR446028_1.fastq
f02e326f800ee26f04df7961adbf7c0a *unitTests/SRR446029_1.fastq
f02e326f800ee26f04df7961adbf7c0a *unitTests/SRR446030_1.fastq
d3a1df6db3d820a1887c92b6385f113f *unitTests/targets.txt
48bb7620b0ea30ecde2cacf14e388025 *unitTests/test_classes.R
271e9a808cf0872c3a4012f003658498 *unitTests/tophat.param
