CoverageHeatmap         Generate a Heatmap of coverage
Heatmap                 Function to create a heatmap object
Heatmap-class           An S4 class to represent a heatmap
HeatmapExamples         Data for man page examples
PWMScanHeatmap          Generate a Heatmap of PWM Scores in DNA sequnce
PatternHeatmap          Generate a Heatmap of patterns in DNA sequence
coords                  Return or set the coords in a Heatmap
default_color           Predifined color palettes from RColorBrewer +
                        Rainbow
getScale                Make an appropriate scale for a heatmap
heatmapOptions          Generate default options for a Heatmap
image                   Return or set the image in a Heatmap
label                   Return or set the label in a Heatmap
length,Heatmap-method   Return the number of sequences in a heatmap
metadata                Return or set the metadata in a Heatmap
nseq                    Return or set nseq in a Heatmap
plotHeatmap             Plot a Heatmap object to the device
plotHeatmapList         Plot a list of heatmaps
plotHeatmapMeta         Plot a Meta-region plot from heatmaps
plotPatternDensityMap   Plot heatmaps for several patterns in DNA
                        sequence
plot_clusters           Plot partition in a separate panel
plot_legend             Plot a color legend for a heatmap
rev,Heatmap-method      Reflect a heatmap in the x axis
scale                   Return or set the scale in a Heatmap
smoothHeatmap           Smooth a heatmap
width,Heatmap-method    Return the width of sequence represented in a
                        heatmap
xm                      Generate co-ordinates for each row of the image
                        matrix of a Heatmap
ym                      Generate co-ordinates for each column of the
                        image matrix of a Heatmap
