useDynLib(groHMM)
import(MASS, parallel, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, GenomicAlignments, rtracklayer)
export(writeWiggle, detectTranscripts, makeConsensusAnnotations,
    evaluateHMMInAnnotations, windowAnalysis, breakTranscriptsOnGenes,
    combineTranscripts, getTxDensity, limitToXkb, runMetaGene, metaGene,
    pausingIndex, polymeraseWave, getCores, averagePlot, countMappableReadsInInterval,
    expressedGenes, metaGeneMatrix, metaGene_nL, readBed, RgammaMLE, Rnorm,
    Rnorm.exp, tlsDeming, tlsLoess, tlsSvd)
