CHANGES IN VERSION 1.1.4
------------------------

BUG FIXES

    o Fixed a mistake in the calculation of differential scores from version 1.1.2

CHANGES IN VERSION 1.1.2
------------------------

NEW FEATURES

    o Proper print() methods for all objects.

BUG FIXES

    o Fixed a bug where chromosomes with a single bin were making problems.


CHANGES IN VERSION 1.1.1
------------------------

NEW FEATURES

    o Selection of peaks can be done with 'changeFDR'.

    o Peak calls are available in each chromstaR-object as list entry '$peaks'.

SIGNIFICANT USER-LEVEL CHANGES

    o 'plotFoldEnrichment' renamed to 'plotEnrichment'.

    o 'exportBinnedData', 'exportUnivariates', 'exportMultivariates', 'exportCombinedMultivariates' replaced by 'exportCounts', 'exportPeaks', 'exportCombinations'.

BUG FIXES

    o Proper computation of fold enrichments, with < 1 indicating depletion and > 1 indicating enrichment.

DEPRECATED AND DEFUNCT

    o 'changePostCutoff'.

    o 'plotFoldEnrichment'.

    o 'exportBinnedData', 'exportUnivariates', 'exportMultivariates', 'exportCombinedMultivariates'.
