CoHyperGParams-class    Class "CoHyperGParams"
CoHyperGResult-class    Class "CoHyperGResult"
Dudley                  List of fitness defect score generated from
                        Dudley et al 2005
GiaeverPheno            List of fitness defect score generated from
                        Giaever et al 2002
HI                      Data from Deutshbauer et al. (2005)
KEGG2SCISI              Mapping between KEGG and ScISI
KastenmayerRaw          Data from Kastenmayer et al. 2006
LesageRaw               Data from Lesage et al. 2005
OsterbergRaw            Data from Osterberg at al. 2006
PCpheno-package         Linkage between Protein Complexes, Pathways,
                        and Phenotypes
SGDphenoL               Saccharomyces Genome Database list of
                        phenotypic data
YEASTOHNOLOG            List of ohnolog gene pairs from Byrne, K.P and
                        Wolfe, K.H (2005)
buildFDMat              Build fitness defect contingency matrix
categoryToEntrezBuilder
                        Return a list mapping multi-protein complexes
                        IDs to YEAST ids
complexStatus           Complex Status
deResult-class          A class for representing the result of a
                        densityEstimate test.
densityEstimate         Observed versus Expected Ratios
getDescr                Get formatted annotation data
getFDgene               Get fitness defect genes
graphTheory             Graph theory to test associations between two
                        or more relationships
gtResult-class          A class for representing the result of a
                        graphTheory test.
overlap                 Count the number of proteins shared by protein
                        complexes
plot                    Graphical method to represent the result of the
                        density or graph test.
ppiInteract             Test the association between AP-MS data and
                        phenotype
reduceM                 Resize a matrix
testResult-class        A virtual class for representing the result of
                        a test.
truncName               Truncate character strings
