# Generated by roxygen2: do not edit by hand

S3method(.DollarNames,MultiAssayExperiment)
export(API)
export(ExperimentList)
export(MultiAssayExperiment)
export(RangedRaggedAssay)
export(clusterOn)
export(experiments)
export(hasAssay)
export(intersectColumns)
export(intersectRows)
export(listToMap)
export(longFormat)
export(mapToList)
export(mergeReplicates)
export(prepMultiAssay)
export(subsetByAssay)
export(subsetByColData)
export(subsetByColumn)
export(subsetByRow)
export(upsetSamples)
export(wideFormat)
exportClasses(ExperimentList)
exportClasses(MultiAssayExperiment)
exportClasses(RangedRaggedAssay)
exportMethods("$")
exportMethods("$<-")
exportMethods("[[")
exportMethods("[[<-")
exportMethods("colData<-")
exportMethods("dimnames<-")
exportMethods("experiments<-")
exportMethods("metadata<-")
exportMethods("pData<-")
exportMethods("sampleMap<-")
exportMethods(ExperimentList)
exportMethods(assay)
exportMethods(assays)
exportMethods(colData)
exportMethods(complete.cases)
exportMethods(disjoin)
exportMethods(duplicated)
exportMethods(experiments)
exportMethods(isEmpty)
exportMethods(length)
exportMethods(longFormat)
exportMethods(mergeReplicates)
exportMethods(metadata)
exportMethods(names)
exportMethods(pData)
exportMethods(sampleMap)
exportMethods(show)
exportMethods(updateObject)
import(BiocGenerics)
import(GenomicRanges)
import(S4Vectors)
import(SummarizedExperiment)
import(methods)
import(shiny)
import(shinydashboard)
importFrom(Biobase,"pData<-")
importFrom(Biobase,pData)
importFrom(BiocGenerics,duplicated)
importFrom(GenomicRanges,GRanges)
importFrom(IRanges,CharacterList)
importFrom(IRanges,IRanges)
importFrom(IRanges,IntegerList)
importFrom(IRanges,LogicalList)
importFrom(IRanges,SplitDataFrameList)
importFrom(IRanges,disjoin)
importFrom(IRanges,endoapply)
importFrom(IRanges,findOverlaps)
importFrom(IRanges,mendoapply)
importFrom(IRanges,splitAsList)
importFrom(IRanges,subsetByOverlaps)
importFrom(S4Vectors,"metadata<-")
importFrom(SummarizedExperiment,"colData<-")
importFrom(SummarizedExperiment,assays)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,findOverlaps)
importFrom(UpSetR,upset)
importFrom(reshape2,melt)
importFrom(stats,kmeans)
importFrom(tidyr,gather)
importFrom(utils,.DollarNames)
