bcb46671f9de67f4c98c54cd2fb7b0a6 *CITATION
aa01a879254f952805bac79532fe6b1e *DESCRIPTION
e45bb29cb7cd6e3284a87186a44f2ea7 *INDEX
7a3f1acb704959701913cbc4e6851942 *Meta/Rd.rds
f85f8a9855ed9ce73530e5baf774a339 *Meta/features.rds
7b883bb7b1b8073e043c4a11fe630f53 *Meta/hsearch.rds
8bdcb00999dd35239ebc494bf0ec762b *Meta/links.rds
0d1cfa3fddbeaae33cde6834ce5ce992 *Meta/nsInfo.rds
d6c6bd6bf97c454f6e9ce122ebbbb511 *Meta/package.rds
44c87178ed0f6f050a7e8e7b6390dcba *Meta/vignette.rds
b68150240a68136df067ca44bc1fce52 *NAMESPACE
0d86674e999b6c90371db5196a68c611 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/GenomicAlignments
79d49a89731b827fd61d1a6c79e858e6 *R/GenomicAlignments.rdb
51aabb7223a1c9ad2ac78a7d81ee3614 *R/GenomicAlignments.rdx
6b26faf2624597ddd375a4cac1f8cefd *doc/GenomicAlignmentsIntroduction.R
c455eefc786bb4aa0a022aefe966557e *doc/GenomicAlignmentsIntroduction.Rnw
4668fffefd955cbb8d9e71df7df2affd *doc/GenomicAlignmentsIntroduction.pdf
ed78911821c3c92bf7bee307f6b9d829 *doc/OverlapEncodings.R
64c188b183312f0fc829eb984856bb0f *doc/OverlapEncodings.Rnw
817d1e3528f6aa46b318380aa78c57ba *doc/OverlapEncodings.pdf
25583b459e881b3bf7d0ca86e7d9c180 *doc/WorkingWithAlignedNucleotides.R
7ffa5eec2eb7b955ca22579bb869bff8 *doc/WorkingWithAlignedNucleotides.Rnw
6c9f2f0f74f8c6794f350cf823011afb *doc/WorkingWithAlignedNucleotides.pdf
f3fa15b65377aac5ee9c663f6bd9e203 *doc/index.html
b2fd7039ad1baf6bf1633354bd8fa48a *doc/summarizeOverlaps.R
5398e425480c1f764c0dce679bd32525 *doc/summarizeOverlaps.Rnw
d1f288450d16d2a2d394e7147e42d0b6 *doc/summarizeOverlaps.pdf
1c380f8159fda8fad5d0d4902ae9ea23 *extdata/sm_treated1.bam
af83f784077fcced98e3603bb7ad7a4e *extdata/sm_untreated1.bam
594f45e8283d54508c0786cbd829e633 *help/AnIndex
10a420aa1c6dc0c715c7a1279e89d0bf *help/GenomicAlignments.rdb
cdac1e999c2aff12059d0ab2aef0ab52 *help/GenomicAlignments.rdx
b1b1b53b1a8ce78fa1ed39d6d8926ade *help/aliases.rds
3626eae3d6df05f53cdccf790a542e55 *help/paths.rds
3116c5a7e3ac0028fb6d0640bde27eba *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
0efe61552a1021f4bdd0dd66f0cd30c1 *libs/i386/GenomicAlignments.dll
5efe1b0eb4f7b03f8379e3cc0070dba9 *libs/x64/GenomicAlignments.dll
22193c72fc07c32f876acee489f2ce96 *unitTests/test_GAlignments-class.R
4c48baf83a7aec1f6f445fa103342c05 *unitTests/test_GAlignmentsList-class.R
8ebc949e316f84ed21c18fdf971de87f *unitTests/test_cigar-utils.R
c494127673b074fbd5bbecb4b5fe80f3 *unitTests/test_coordinate-mapping-methods.R
229bfd98328fafca3f1ad0a5e5e1d307 *unitTests/test_findSpliceOverlaps-methods.R
03c20128d1742334efd9c564122e1e4b *unitTests/test_intra-range-methods.R
a369c93b31e2e090aba36dcab66fa759 *unitTests/test_readGAlignmentPairs.R
c526cbfe22b11dcb065c9c68692e5588 *unitTests/test_readGAlignments.R
8e3c3cb75da36b4ab3daa58c6b46bef7 *unitTests/test_readGAlignmentsList.R
3ee2246e46dee0999386dd9538c4a5cc *unitTests/test_summarizeOverlaps-methods.R
