ALDEx2m-package         Analysis of differential abundance taking
                        sample variation into account
aldex                   Compute an 'aldex' Object
aldex.clr               Compute an 'aldex.clr' Object
aldex.clr-class         The aldex.clr class
aldex.corr              calculate Pearson's Product moment and
                        Spearman's rank correlations
aldex.effect            calculate effect sizes and differences between
                        conditions
aldex.glm               calculate glm and Kruskal Wallis test
                        statistics
aldex.plot              Plot an 'aldex' Object
aldex.set.mode          identify set of denominator features for
                        log-ratio calculation
aldex.ttest             calculate Welch's t-test and Wilcoxon test
                        statistics
getFeatureNames         getFeatureNames
getFeatures             getFeatures
getMonteCarloInstances
                        getMonteCarloInstances
getMonteCarloReplicate
                        getMonteCarloReplicate
getReads                getReads
getSampleIDs            getSampleIDs
numConditions           numConditions
numFeatures             numFeatures
numMCInstances          numMCInstances
selex                   Selection-based differential sequence variant
                        abundance dataset
