CHANGES IN VERSION 2.9.11
-------------------------
 o Restore -fpermissive flag on windows

CHANGES IN VERSION 2.9.10
-------------------------
 o Remove register keyword causing WARNING. 

CHANGES IN VERSION 2.9.9
------------------------
 o Remove C++ references to cout/cerr/abort in pwiz code (see issue #89)

CHANGES IN VERSION 2.9.8
------------------------
 o Fix reading spectrum polarity from mzML using pwiz backend, closes #81

CHANGES IN VERSION 2.9.7
------------------------
 o Fix compilation on macOS

CHANGES IN VERSION 2.9.6
------------------------
 o Compile on macOS, but hdf5 path hard-coded
 
CHANGES IN VERSION 2.9.5
------------------------
 o Add missing boost/config/platform/macos.hpp <2017-01-25 Wed>
 
CHANGES IN VERSION 2.9.4
------------------------
 o New chromatogram accessors (for pwiz backend only) - see issue #73
   <2017-01-23 Mon>
 
CHANGES IN VERSION 2.9.3
------------------------
 o bump to new Rcpp 0.12.8 version <2017-01-05 Thu>
 
CHANGES IN VERSION 2.9.2
------------------------
 o cleanup CFLAGS and LIBS for libnetcdf
 o add file missing for oaxaca (Apple clang 3.5svn / 600.0.57)
 
CHANGES IN VERSION 2.9.1
------------------------
 o Delete RAMPAdapter pointer in pwiz backend (by jotsetung)
   <2016-11-20 Sun>
 o Use spectra in addition to peaks (see issue #15)
   <2016-12-09 Fri>
 o New pwiz (commit 946d23d75dc70a7a4913d8e05e3d59b9255f278e)

CHANGES IN VERSION 2.9.0
------------------------
 o Bioc devel 3.5
 
CHANGES IN VERSION 2.8.0
------------------------
 o Bioc release 3.4

CHANGES IN VERSION 2.7.13
-------------------------
 o Fix waring on OSX (see issue #60)
 
CHANGES IN VERSION 2.7.12
-------------------------
 o Fixing last warning on MacOS
 
CHANGES IN VERSION 2.7.11
-------------------------
 o Fix failing example and test due to updated msdata::protemics data
 
CHANGES IN VERSION 2.7.10
-------------------------
 o compiling and loading on Windows (hopefully)
 
CHANGES IN VERSION 2.7.9
------------------------
 o Updating Makevars.win 
 
CHANGES IN VERSION 2.7.8
------------------------
 o compile pwiz when installing on Windows <2016-09-26 Mon>
 
CHANGES IN VERSION 2.7.7
------------------------
 o add netcdf static lib; potential incompatibility <2016-09-22 Thu>
 
CHANGES IN VERSION 2.7.6
------------------------
 o new isolationWindow accessor <2016-09-23 Fri>
 
CHANGES IN VERSION 2.7.5
------------------------
 o Apply Martin's free/delete patch - see
   https://github.com/sneumann/mzR/issues/52 <2016-09-22 Thu>
 
CHANGES IN VERSION 2.7.4
------------------------
 o upgrade pwiz
 o ensure file connections are cleaned and closed for pwiz.

CHANGES IN VERSION 2.7.1
------------------------
 o revert added compiler switch, and fixed boost code instead to get rid of warnings

CHANGES IN VERSION 2.5.8
------------------------
 o fix compiler Warning with clang on MacOS

CHANGES IN VERSION 2.5.7
------------------------
 o fix compilation with clang on MacOS

CHANGES IN VERSION 2.5.6
------------------------
 o fix compilation on new windows toolchain,
   thanks to Kasper Daniel Hansen and Dan Tenenbaum

CHANGES IN VERSION 2.5.3
------------------------
 o new pwiz.version() function returning the pwiz backend version (KK)

CHANGES IN VERSION 2.5.2
------------------------
 o Provide pre-compiled windows libraries, again thanks to Qiang Kou (KK)

CHANGES IN VERSION 2.5.1
------------------------
 o Import Boost 1.59, thanks to Qiang Kou (KK)

CHANGES IN VERSION 2.3.3
------------------------
 o bump to new Rcpp 0.12.1 version <2015-09-29 Tue>

CHANGES IN VERSION 2.3.2
------------------------
 o Fix typo/bug in peaks,mzRpwiz <2015-07-31 Fri>

CHANGES IN VERSION 2.3.1
------------------------
 o update Rcpp version message to point to support site <2015-05-08 Fri>

CHANGES IN VERSION 2.1.12
-------------------------
 o Remove superfluous BiocGenerics in Suggests [2015-03-01 Sun]
 o Merged KK's Makefile to generate pwiz lib for windows [2015-03-01 Sun]

CHANGES IN VERSION 2.1.11
-------------------------
 o Using generics from BiocGenerics (fileName, score) and ProtGenerics
   [2015-02-28 Sat]

CHANGES IN VERSION 2.1.10
-------------------------
 o Add instrumentInfo() and runInfo() for CDF backend (closes issue #22)
 o Add precompiled libpwiz.a to reduce compile time on Windows (closes issue #21), thanks to KK

CHANGES IN VERSION 2.1.9
------------------------
 o Fix a compiler warning on OSX in the pep_XML serialiser

CHANGES IN VERSION 2.1.8
------------------------
 o Fix build on unix with netcdf.h in non-standard location

CHANGES IN VERSION 2.1.7
------------------------
 o Fix score segfault (see issue #18) and remove usage of ListBuilder.
 o Update unit test to reflext new score code.

CHANGES IN VERSION 2.1.6
------------------------
 o adding an acquisitionNum column to psms (closes issue #17)
   [2015-02-05 Thu]

CHANGES IN VERSION 2.1.5
------------------------
 o don't print '1' to the console when calling get3Dmap
   [2015-01-29 Thu]
 o add sequence length in psms output (closes issue #19)
   [2015-02-04 Wed]

CHANGES IN VERSION 2.1.4
------------------------
 o documentation and vignette: mzIdentML version 1.1 support only
   [2015-01-23 Fri]

CHANGES IN VERSION 2.1.1
------------------------
 o remove dependency on faahKO

CHANGES IN VERSION 1.99.4
-------------------------
 o don't run pwiz example [2014-10-05 Sun]

CHANGES IN VERSION 1.99.3
-------------------------
 o revising unit testing and using suggested convention as described
   in Bioc unitTesting guidelines  [2014-10-02 Thu]

CHANGES IN VERSION 1.99.2
-------------------------
 o bump to new Rcpp 0.11.3 version

CHANGES IN VERSION 1.99.1
-------------------------
 o annoucning pwiz in vignette and that it will become the default
   backend in Bioc 3.1 [2014-09-25 Thu]
 o adding a dummy close for pwiz backend to avoid breaking code
   that properly closes the previous ramp backend [2014-09-21 Sun]
 o Not using ListBuilder to make psms data.frame and fix segfautls,
   via KK [2014-09-27 Sat]

CHANGES IN VERSION 1.99.0
-------------------------
 o New pwiz backend and support for mzid, contributed by Qiang Kou as
   part of GSoC 2014.
 o Using BiocStyle for vignette [2014-08-26 Tue]

CHANGES IN VERSION 1.11.11
-------------------------
 o Remove superflouus library call in unitTests, should fix R CMD check on windows

CHANGES IN VERSION 1.11.10
-------------------------
 o Remove redundant columns when returning several spectra

CHANGES IN VERSION 1.11.9
-------------------------
 o Fix a bug in header() returning too few columns, introduced during 1.11.7

CHANGES IN VERSION 1.11.8
-------------------------
 o Fix a windows compile problem by early importing Rcpp.h

 CHANGES IN VERSION 1.11.7
-------------------------
 o include polarity information into header() output

CHANGES IN VERSION 1.11.6
-------------------------
 o removed one redundant parser which fixes inconsistencies
   in the scan headers

CHANGES IN VERSION 1.11.5
-------------------------
 o restored the polarity extraction

CHANGES IN VERSION 1.11.4
-------------------------
 o restored the old ramp Interface

CHANGES IN VERSION 1.11.2
-------------------------
 o adding missed src files [2014-05-28 Tue]
 o merging master [2014-05-30 Fri]

CHANGES IN VERSION 1.11.1
-------------------------
 o update pwiz/boost to support Maverick [2014-05-26 Mon]

CHANGES IN VERSION 1.9.8
------------------------
 o Pointing to the relevant wiki page in the Rcpp compiler/linker
   warning [2014-04-03 Thu]

CHANGES IN VERSION 1.9.7
------------------------
 o modify to new biocViews to DESCRIPTION file (s.arora)

CHANGES IN VERSION 1.9.6
------------------------
 o import all of Rcpp to avoid warnings in reverse dependencies <2014-02-14 Fri>

CHANGES IN VERSION 1.9.3
------------------------
 o fix a string in ramp.cpp to enable compilation on clang-3.4

CHANGES IN VERSION 1.9.2
------------------------
 o version bump for Rcpp 0.10.6 <2013-10-30 Wed>

CHANGES IN VERSION 1.9.1
------------------------
 o moved vignettes to /vignettes <2013-10-17 Thu>

CHANGES IN VERSION 1.7.4
------------------------
 o version bump for Rcpp 0.10.5 <2013-10-02 Wed>

CHANGES IN VERSION 1.7.3
------------------------
 o Fix a compile error with the clang-3.3 compiler

CHANGES IN VERSION 1.7.2
------------------------
 o updated Rcpp number mismatch warning to include versions <2013-08-01 Thu>

CHANGES IN VERSION 1.7.1
------------------------
 o version bump for Rcpp 0.10.4

CHANGES IN VERSION 1.5.9
------------------------
 o version bump for Rcpp 0.10.3

CHANGES IN VERSION 1.5.8
------------------------
 o version bump for Rcpp 0.10.2

CHANGES IN VERSION 1.5.7
------------------------
 o only load Rcpp modules after checking for Rcpp
   version conflict (DT)

CHANGES IN VERSION 1.5.6
------------------------
 o Explicitely call utils::packageVersion() to avoid warning (SN) <2012-12-15 Sat>

CHANGES IN VERSION 1.5.5
------------------------a
 o Added utils to Depends (SN) <2012-12-14 Fri>

CHANGES IN VERSION 1.5.4
------------------------
 o requiring Rcpp (>= 0.10.1) LG <2012-12-05 Wed>
 o catching Rcpp build-time version (thanks to
   Dan for help!) LG <2012-12-05 Wed>
 o checking Rcpp installed vs building versions
   and warn if these are different. LG <2012-12-05 Wed>

CHANGES IN VERSION 1.5.3
------------------------
 o bumping version to force rebuild due to Rcpp
   change LG <2012-12-05 Wed>
 o added NEWS file <2012-12-05 Wed>
