# An integrated analysis package of miRNA and mRNA expression data

## Documentation for package ‘anamiR’ version 1.4.2

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

anamiR-package | anamiR: An integrated analysis package of miRNA and mRNA expression data.
anamiR | anamiR: An integrated analysis package of miRNA and mRNA expression data.
database_support | Intersect with databases for potential miRNA-target gene interactions
differExp_continuous | Find differential expression genes or miRNAs from given expression data
differExp_discrete | Find differential expression genes or miRNAs from given expression data
egSymb | A table with information of gene symbol and gene ID
enrichment | Enrich pathway with genes from potential miRNA-target gene interactions.
GSEA_ana | This function will do GSEA analysis.
GSEA_res | Pipeline of anamiR is applied to given output from GSEA_ana.
heat_vis | Using correlation information to draw a heatmaps
mirna | miRNA expression data about breast cancer
miR_converter | Convert miRNA annotation to the miRBase 21 version
mrna | mRNA expression data about breast cancer
msigdb.gs | MsigDB C2 pathways with gene set information
multi_Differ | Find differential expression groups of each genes or miRNA from expression data
negative_cor | Find the correlation coefficient between each gene and miRNA.
normalization | Normalize expression data
pheno.mirna | phenotype data of 'mirna' about breast cancer
pheno.mrna | phenotype data of 'mrna' about breast cancer
table_pre | A list with information of genes and miRNAs.