Package: SeqArray
Type: Package
Title: Big Data Management of Whole-genome Sequence Variant Calls
Version: 1.16.1
Date: 2017-09-30
Depends: R (>= 3.3.0), gdsfmt (>= 1.10.1)
Imports: methods, parallel, S4Vectors, IRanges, GenomicRanges,
        GenomeInfoDb, SummarizedExperiment, Biostrings,
        VariantAnnotation
LinkingTo: gdsfmt
Suggests: BiocParallel, digest, crayon, RUnit, Biobase, BiocGenerics,
        knitr, Rcpp, SNPRelate
Authors@R: c(person("Xiuwen", "Zheng", role=c("aut", "cre"),
        email="zhengx@u.washington.edu"),
        person("Stephanie", "Gogarten", role="aut",
        email="sdmorris@u.washington.edu"),
        person("David", "Levine", role="ctb"),
        person("Cathy", "Laurie", role="ctb"))
Description: Big data management of whole-genome sequencing variant calls with
        thousands of individuals: genotypic data (e.g., SNVs, indels and
        structural variation calls) and annotations in SeqArray files are
        stored in an array-oriented and compressed manner, with efficient data
        access using the R programming language.
License: GPL-3
VignetteBuilder: knitr
ByteCompile: TRUE
URL: http://github.com/zhengxwen/SeqArray
BugReports: http://github.com/zhengxwen/SeqArray/issues
biocViews: Infrastructure, DataRepresentation, Sequencing, Genetics
NeedsCompilation: yes
Packaged: 2017-10-02 00:22:11 UTC; biocbuild
Author: Xiuwen Zheng [aut, cre],
  Stephanie Gogarten [aut],
  David Levine [ctb],
  Cathy Laurie [ctb]
Maintainer: Xiuwen Zheng <zhengx@u.washington.edu>
Built: R 3.4.1; x86_64-apple-darwin15.6.0; 2017-10-02 14:54:19 UTC; unix
