Package: specL
Type: Package
Title: specL - Prepare Peptide Spectrum Matches for Use in Targeted
        Proteomics
Version: 1.8.0
Author: Christian Trachsel <christian.trachsel@fgcz.uzh.ch>, Christian
        Panse <cp@fgcz.ethz.ch>, Jonas Grossmann <jg@fgcz.ethz.ch>, 
	Witold E. Wolski <wewolski@gmail.com>
Maintainer: Christian Panse <cp@fgcz.ethz.ch>, Witold E. Wolski <wewolski@gmail.com>
Depends: R (>= 3.3), methods, DBI, RSQLite, seqinr, protViz (>=
        0.2.15),
LinkingTo: Rcpp (>= 0.12.4)
Suggests: RUnit, BiocGenerics, BiocStyle, plotrix, knitr, msqc1 (>=
        1.0.0)
Description: specL provides a function for generating spectra libraries
        which can be used for MRM SRM MS workflows in proteomics. The
        package provides a BiblioSpec reader, a function which can add
        the protein information using a FASTA formatted amino acid
        file, and an export method for using the created library in the
        Spectronaut software.
License: GPL-3
URL: https://github.com/fgcz/specL
Collate: read.bibliospec.R genSwathIonLib.R annotate.protein_id.R
        AllGenerics.R specL.R specLSet.R cdsw.R ssrc.R zzz.R
biocViews: MassSpectrometry, Proteomics
LazyData: true
BugReports: https://github.com/fgcz/specL/issues
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2016-10-18 00:05:29 UTC; biocbuild
Built: R 3.3.1; i386-w64-mingw32; 2016-10-18 04:52:26 UTC; windows
Archs: i386, x64
