Package: regsplice
Version: 1.0.0
Title: Lasso-Based Methods for Detection of Differential Exon Usage
Description: Statistical methods for detection of differential exon
        usage in RNA-seq and exon microarray data sets, using L1
        regularization (lasso) to improve power.
Authors@R: person("Lukas M.", "Weber", email = "lukmweber@gmail.com",
        role = c("aut", "cre"))
Author: Lukas M. Weber [aut, cre]
Maintainer: Lukas M. Weber <lukmweber@gmail.com>
URL: https://github.com/lmweber/regsplice
BugReports: https://github.com/lmweber/regsplice/issues
License: MIT + file LICENSE
LazyData: true
Imports: glmnet, SummarizedExperiment, S4Vectors, BiocParallel, limma,
        edgeR, stats, utils, methods
Suggests: testthat, BiocStyle, knitr, rmarkdown
VignetteBuilder: knitr
RoxygenNote: 5.0.1
biocViews: AlternativeSplicing, DifferentialExpression,
        DifferentialSplicing, Sequencing, RNASeq, Microarray,
        ExonArray, ExperimentalDesign, Software
Collate: 'class_RegspliceResults.R' 'class_RegspliceData.R' 'LRTests.R'
        'createDesignMatrix.R' 'filterLowCounts.R' 'filterZeros.R'
        'fitting_functions_multiple_genes.R'
        'fitting_functions_single_gene.R' 'helper_functions.R'
        'initializeResults.R' 'regsplice_wrapper.R'
        'runNormalization.R' 'runVoom.R' 'summaryTable.R'
NeedsCompilation: no
Packaged: 2016-10-18 00:45:23 UTC; biocbuild
Built: R 3.3.1; ; 2016-10-18 04:24:06 UTC; windows
