addTCGAdata	addTCGAdata
analysesServer	analysesServer
analysesUI	analysesUI
appServer	appServer
appUI	appUI
articleUI	articleUI
basicStats	basicStats
browserHistory	browserHistory
bsModal2	bsModal2
calculateInclusionLevels	calculateInclusionLevels
checkFileFormat	checkFileFormat
checkFirebrowse	checkFirebrowse
checkIntegrity	checkIntegrity
checkSurvivalInput	checkSurvivalInput
closeProgress	closeProgress
createDataTab	createDataTab
createDensitySparklines	createDensitySparklines
createGroup	createGroup
createGroupByAttribute	createGroupByAttribute
createGroupByColumn	createGroupByColumn
createGroupById	createGroupById
createGroupFromInput	createGroupFromInput
createJunctionsTemplate	createJunctionsTemplate
dataServer	dataServer
dataUI	dataUI
diffAnalyses	diffAnalyses
diffSplicingEventServer	diffSplicingEventServer
diffSplicingEventUI	diffSplicingEventUI
diffSplicingServer	diffSplicingServer
diffSplicingTableServer	diffSplicingTableServer
diffSplicingTableUI	diffSplicingTableUI
diffSplicingUI	diffSplicingUI
disableTab	disableTab
downloadFiles	downloadFiles
echoProgress	echoProgress
enableTab	enableTab
endProcess	endProcess
ensemblToUniprot	ensemblToUniprot
errorAlert	showAlert
errorModal	styleModal
escape	escape
export_highcharts	export_highcharts
filterGroups	filterGroups
firebrowseUI	firebrowseUI
fisher	fisher
fligner	fligner
getActiveDataset	getActiveDataset
getAssemblyVersion	getAssemblyVersion
getAutoNavigation	getAutoNavigation
getCategories	getCategories
getCategory	getCategory
getCategoryData	getCategoryData
getClinicalData	getClinicalData
getClinicalMatchFrom	getClinicalMatchFrom
getColumnsTime	getColumnsTime
getCores	getCores
getData	getData
getDataRows	getDataRows
getDifferentialAnalyses	getDifferentialAnalyses
getDifferentialAnalysesSurvival	getDifferentialAnalysesSurvival
getDownloadsFolder	getDownloadsFolder
getEvent	getEvent
getFirehoseCohorts	getFirehoseCohorts
getFirehoseDataTypes	getFirehoseDataTypes
getFirehoseDateFormat	getFirehoseDateFormat
getFirehoseDates	getFirehoseDates
getGlobal	getGlobal
getGroupsFrom	getGroupsFrom
getInclusionLevels	getInclusionLevels
getInclusionLevelsPCA	getInclusionLevelsPCA
getJunctionQuantification	getJunctionQuantification
getMatchingSamples	getMatchingSamples
getNumerics	getNumerics
getPatientFromSample	getPatientFromSample
getPatientId	getPatientId
getPrecision	getPrecision
getPSIperPatient	getPSIperPatient
getSampleId	getSampleId
getSampleInfo	getSampleInfo
getSelectedGroups	getSelectedGroups
getServerFunctions	getServerFunctions
getSignificant	getSignificant
getSpecies	getSpecies
getSplicingEventCoordinates	getSplicingEventCoordinates
getSplicingEventTypes	getSplicingEventTypes
getUiFunctions	getUiFunctions
getURLtoDownload	getURLtoDownload
getValidEvents	getValidEvents
globalSelectize	globalSelectize
groupByAttribute	groupByAttribute
groupByExpression	groupByExpression
groupByGrep	groupByGrep
groupById	groupById
groupPerPatient	groupPerPatient
groupPerSample	groupPerSample
groupsServer	groupsServer
groupsServerOnce	groupsServerOnce
groupsUI	groupsUI
gtexDataServer	gtexDataServer
gtexDataUI	gtexDataUI
hchart.survfit	hchart.survfit
hc_scatter	hc_scatter
inclusionLevelsInterface	inclusionLevelsInterface
inclusionLevelsServer	inclusionLevelsServer
inclusionLevelsUI	inclusionLevelsUI
infoModal	styleModal
infoServer	infoServer
infoUI	infoUI
insideFile	insideFile
is.whole	is.whole
isFirehoseUp	isFirehoseUp
joinEventsPerType	joinEventsPerType
junctionString	junctionString
kruskal	kruskal
labelBasedOnCutoff	labelBasedOnCutoff
levene	levene
leveneTest	leveneTest
listAllAnnotations	listAllAnnotations
listSplicingAnnotations	listSplicingAnnotations
loadAnnotation	loadAnnotation
loadBy	loadBy
loadedDataModal	loadedDataModal
loadFile	loadFile
loadFileFormats	loadFileFormats
loadFirehoseData	loadFirehoseData
loadFirehoseFolders	loadFirehoseFolders
loadGtexData	loadGtexData
loadLocalFiles	loadLocalFiles
loadRequiredData	missingDataModal
localDataServer	localDataServer
localDataUI	localDataUI
missingDataGuide	missingDataModal
missingDataModal	missingDataModal
modTabPanel	modTabPanel
navSelectize	navSelectize
noinfo	noinfo
operateOnGroups	operateOnGroups
optimalPSIcutoff	optimalPSIcutoff
optimSurvDiff	optimSurvDiff
optimSurvDiffOptions	optimSurvDiffOptions
parseDateResponse	parseDateResponse
parseFirehoseMetadata	parseFirehoseMetadata
parseMatsA3SS	parseMatsGeneric
parseMatsA5SS	parseMatsGeneric
parseMatsAFE	parseMatsGeneric
parseMatsALE	parseMatsGeneric
parseMatsAnnotation	parseMisoAnnotation
parseMatsEvent	parseMatsEvent
parseMatsGeneric	parseMatsGeneric
parseMatsMXE	parseMatsGeneric
parseMatsRI	parseMatsGeneric
parseMatsSE	parseMatsGeneric
parseMisoA3SS	parseMisoGeneric
parseMisoA5SS	parseMisoGeneric
parseMisoAFE	parseMisoGeneric
parseMisoALE	parseMisoGeneric
parseMisoAnnotation	parseMisoAnnotation
parseMisoEvent	parseMisoEvent
parseMisoEventID	parseMisoEventID
parseMisoGeneric	parseMisoGeneric
parseMisoId	parseMisoId
parseMisoMXE	parseMisoGeneric
parseMisoRI	parseMisoGeneric
parseMisoSE	parseMisoGeneric
parseMisoTandemUTR	parseMisoGeneric
parseSampleGroups	parseSampleGroups
parseSplicingEvent	parseSplicingEvent
parseSuppaA3SS	parseSuppaGeneric
parseSuppaA5SS	parseSuppaGeneric
parseSuppaAFE	parseSuppaGeneric
parseSuppaALE	parseSuppaGeneric
parseSuppaAnnotation	parseMisoAnnotation
parseSuppaEvent	parseSuppaEvent
parseSuppaGeneric	parseSuppaGeneric
parseSuppaMXE	parseSuppaGeneric
parseSuppaRI	parseSuppaGeneric
parseSuppaSE	parseSuppaGeneric
parseTcgaSampleInfo	parseTcgaSampleInfo
parseUniprotXML	parseUniprotXML
parseUrlsFromFirehoseResponse	parseUrlsFromFirehoseResponse
parseValidFile	parseValidFile
parseVastToolsA3SS	parseVastToolsSE
parseVastToolsA5SS	parseVastToolsSE
parseVastToolsAnnotation	parseMisoAnnotation
parseVastToolsEvent	parseVastToolsEvent
parseVastToolsRI	parseVastToolsSE
parseVastToolsSE	parseVastToolsSE
pcaServer	pcaServer
pcaUI	pcaUI
performPCA	performPCA
plotDistribution	plotDistribution
plotMiniSurvivalCurves	plotMiniSurvivalCurves
plotPCA	plotPCA
plotProtein	plotProtein
plotSurvivalCurves	plotSurvivalCurves
plotTranscripts	plotTranscripts
plotVariance	plotVariance
prepareAnnotationFromEvents	prepareAnnotationFromEvents
prepareFirehoseArchives	prepareFirehoseArchives
processButton	processButton
processDatasetNames	processDatasetNames
processSurvData	processSurvData
processSurvival	processSurvival
processSurvTerms	processSurvTerms
psichomics	psichomics
pubmedUI	pubmedUI
quantifySplicing	quantifySplicing
queryEnsembl	queryEnsembl
queryEnsemblByEvent	queryEnsemblByEvent
queryEnsemblByGene	queryEnsemblByGene
queryFirehoseData	queryFirehoseData
queryPubMed	queryPubMed
queryUniprot	queryUniprot
readFile	readFile
renameDuplicated	renameDuplicated
renameGroups	renameGroups
renderDataTableSparklines	renderDataTableSparklines
renderGeneticInfo	renderGeneticInfo
rm.null	rm.null
roundDigits	roundDigits
rowVar	rowVar
selectGroupsServer	selectGroupsServer
selectGroupsUI	selectGroupsUI
setActiveDataset	setActiveDataset
setAssemblyVersion	setAssemblyVersion
setAutoNavigation	setAutoNavigation
setCategory	setCategory
setClinicalMatchFrom	setClinicalMatchFrom
setCores	setCores
setData	setData
setDifferentialAnalyses	setDifferentialAnalyses
setDifferentialAnalysesSurvival	setDifferentialAnalysesSurvival
setEvent	setEvent
setFirehoseData	setFirehoseData
setGlobal	setGlobal
setGroupsFrom	setGroupsFrom
setInclusionLevels	setInclusionLevels
setInclusionLevelsPCA	setInclusionLevelsPCA
setLocalData	setLocalData
setPatientId	setPatientId
setPrecision	setPrecision
setSampleId	setSampleId
setSampleInfo	setSampleInfo
setSignificant	setSignificant
setSpecies	setSpecies
settingsServer	settingsServer
settingsUI	settingsUI
setURLtoDownload	setURLtoDownload
showAlert	showAlert
showGroupsTable	showGroupsTable
signifDigits	signifDigits
singleDiffAnalyses	singleDiffAnalyses
sortCoordinates	sortCoordinates
spearman	spearman
startProcess	startProcess
startProgress	startProgress
styleModal	styleModal
survdiff.survTerms	survdiff.survTerms
survfit.survTerms	survfit.survTerms
survivalServer	survivalServer
survivalUI	survivalUI
tabDataset	tabDataset
templateServer	templateServer
templateUI	templateUI
testSurvival	testSurvival
testSurvivalCutoff	testSurvivalCutoff
textSuggestions	textSuggestions
timePerPatient	timePerPatient
trimWhitespace	trimWhitespace
ttest	ttest
uniqueBy	uniqueBy
updateClinicalParams	updateClinicalParams
updateProgress	updateProgress
vennEvents	vennEvents
warningAlert	showAlert
warningModal	styleModal
wilcox	wilcox
