addSummaryChart	addSummaryChart
calcMSQCMetrics	calcMSQCMetrics
chargeStat	chargeStat
cntStat	cntStat
combineRun	combineRun
createTargetDecoyDB	createTargetDecoyDB
getEnzyme	getEnzyme
getMods	getMods
labelRatio	labelRatio
loadmsQCres	loadmsQCres
msQCpipe	msQCpipe
plotBioRepVenn	plotBioRepVenn
plotFractionIDResult	plotFractionIDResult
plotMS1Error	plotMS1Error
plotMS2Error	plotMS2Error
plotMS2Error_obsolete	plotMS2Error_obsolete
plotSampleIDResultErrorBar	plotSampleIDResultErrorBar
plotSampleVenn	plotSampleVenn
plotTechRepVenn	plotTechRepVenn
print.msQCres	print.msQCres
proteinGroup	proteinGroup
reportHTML	reportHTML
runTandem	runTandem
showEnzyme	showEnzyme
showMods	showMods
