Package: msPurity
Type: Package
Title: Automated Evaluation of Precursor Ion Purity for Mass
        Spectrometry Based Fragmentation in Metabolomics
Version: 1.0.0
Date: 2016-10-13
Author: Thomas N. Lawson, Ralf Weber, Martin Jones, Mark Viant, Warwick Dunn
Maintainer: Thomas N. Lawson <thomas.nigel.lawson@gmail.com>
Description: Assess the contribution of the targeted precursor in fragmentation acquired or anticipated isolation
    windows using a metric called "precursor purity". Also provides simple processing steps (averaging, filtering,
    blank subtraction, etc) for DI-MS data.
    Works for both LC-MS(/MS) and DI-MS(/MS) data. 
License: GPL (>= 2)
LazyData: TRUE
Depends: Rcpp
Imports: plyr, foreach, parallel, doSNOW, stringr, mzR, reshape2,
        fastcluster, ggplot2, sapa
Suggests: testthat, xcms, BiocStyle, knitr, rmarkdown, msPurityData
VignetteBuilder: knitr
RoxygenNote: 5.0.1
biocViews: MassSpectrometry, Metabolomics, Software
Collate: 'all-generics.R' 'iw-norm.R' 'pcalc.R' 'purityA-class.R'
        'purityA-constructor.R' 'purityA-frag4feature.R'
        'purityA-validate.R' 'purityD-class.R' 'purityD-constructor.R'
        'purityD-av-spectra.R' 'purityD-dims-purity.R'
        'purityD-fileList.R' 'purityD-filterp.R' 'purityD-subtract.R'
        'purityD-writeOut.R' 'purityX-class.R' 'purityX-constructor.R'
        'spectral-complexity.R' 'splinepurity.R'
NeedsCompilation: no
Packaged: 2016-10-18 00:35:46 UTC; biocbuild
Built: R 3.3.1; ; 2016-10-18 03:43:07 UTC; windows
