annotFilter             Checks and filters an annotation list.
annotList2mat           Convert an annotation list into an annotation
                        matrix.
annotMat2list           Convert an annotation matrix into an annotation
                        list.
getGOnames              Get Gene Ontology names
getKEGGnames            Get KEGG names
getOntology             Get GO term Ontology
goLeaves                Keep just leaf nodes from the Gene Ontology
                        DAG.
indexTransform          Transform ranking index distribution.
mdGsa                   Multi-Dimensional Gene Set Analysis.
mdPat                   Multi-Dimensional Gene Set Analysis Pattern
                        Classification.
plotMdGsa               Plot Multi-Dimensional Gene Set
propagateGO             Propagate Gene Ontology annotation.
pval2index              Transform p-values in into a ranking index.
revList                 Revert an annotation list.
splitOntologies         Split an annotation list of GO terms by
                        ontologies.
transferIndex           Transfer a ranking index from regulatory
                        elements, such as miRNAs, to genes.
uvGsa                   Uni-Variate Gene Set Analysis.
uvPat                   Uni-Variate Gene Set Analysis Pattern
                        Classification.
uvSignif                Filter significant terms in the univariate gene
                        set analysis.
